Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16088 | 5' | -58.3 | NC_004065.1 | + | 24962 | 0.66 | 0.894178 |
Target: 5'- aCGaugGGUCGGUCGugGGUGgGCGUc -3' miRNA: 3'- -GCgcaUCAGCCGGCugUCGCaCGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 27210 | 0.68 | 0.777798 |
Target: 5'- gGCGgcGgucgUGGUCGGCAGCGUGUu-- -3' miRNA: 3'- gCGCauCa---GCCGGCUGUCGCACGcaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 28481 | 0.74 | 0.481515 |
Target: 5'- uGUGgcGUCuGGCCGACAGCGccGCGg- -3' miRNA: 3'- gCGCauCAG-CCGGCUGUCGCa-CGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 31914 | 0.73 | 0.518553 |
Target: 5'- aCGCGgcgcGUC-GCCGACAGCGUGCc-- -3' miRNA: 3'- -GCGCau--CAGcCGGCUGUCGCACGcaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 33469 | 0.68 | 0.820796 |
Target: 5'- aCGCGUucgCGGCCGugGGCGccuacGCGc- -3' miRNA: 3'- -GCGCAucaGCCGGCugUCGCa----CGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 38121 | 0.67 | 0.852395 |
Target: 5'- uGcCGUAcGUCGcGCCGGacuuCGGCGUGCGc- -3' miRNA: 3'- gC-GCAU-CAGC-CGGCU----GUCGCACGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 46164 | 0.66 | 0.904669 |
Target: 5'- uGCGU--UCGGCCacggccaaacacgcGACGGCGUGgGg- -3' miRNA: 3'- gCGCAucAGCCGG--------------CUGUCGCACgCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 59322 | 0.67 | 0.852395 |
Target: 5'- aGCGgcaaUCGcGCCGcggGCGGCGUGCGa- -3' miRNA: 3'- gCGCauc-AGC-CGGC---UGUCGCACGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 65315 | 0.79 | 0.249363 |
Target: 5'- cCGCGUGGUgGGaCCGGCGGCGgcgGCGg- -3' miRNA: 3'- -GCGCAUCAgCC-GGCUGUCGCa--CGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 66735 | 0.67 | 0.82895 |
Target: 5'- cCGUGccGUCGGaccCCGGCGGCGUcGCGa- -3' miRNA: 3'- -GCGCauCAGCC---GGCUGUCGCA-CGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 67449 | 0.66 | 0.900424 |
Target: 5'- aCGaCGgaccuGUCGGCCGagGCGGCG-GUGUa -3' miRNA: 3'- -GC-GCau---CAGCCGGC--UGUCGCaCGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 67749 | 0.66 | 0.894178 |
Target: 5'- aGCGgcGcCGcGuCCGACGGCGUGaCGa- -3' miRNA: 3'- gCGCauCaGC-C-GGCUGUCGCAC-GCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 73866 | 0.67 | 0.85985 |
Target: 5'- aGUGUuGaUCGGaCCGGCAGCGccgGUGUUg -3' miRNA: 3'- gCGCAuC-AGCC-GGCUGUCGCa--CGCAA- -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 94421 | 0.66 | 0.906456 |
Target: 5'- cCGCGUGa-CGGCCGucuccCAGCGgcGCGUg -3' miRNA: 3'- -GCGCAUcaGCCGGCu----GUCGCa-CGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 99390 | 0.67 | 0.844756 |
Target: 5'- gGCGUGGgCuGCCuGGCGGCGggcGCGUUg -3' miRNA: 3'- gCGCAUCaGcCGG-CUGUCGCa--CGCAA- -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 99952 | 0.68 | 0.80402 |
Target: 5'- uCGcCGUAGUCGaccaccGCCG-CGGCGUGCu-- -3' miRNA: 3'- -GC-GCAUCAGC------CGGCuGUCGCACGcaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 101421 | 0.7 | 0.683802 |
Target: 5'- -cCGUGGgggCGGCUGGC-GCGUGCGg- -3' miRNA: 3'- gcGCAUCa--GCCGGCUGuCGCACGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 105106 | 0.73 | 0.537494 |
Target: 5'- gCGCGUGGU-GGCCGACGaCGUGCc-- -3' miRNA: 3'- -GCGCAUCAgCCGGCUGUcGCACGcaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 106975 | 0.66 | 0.88772 |
Target: 5'- aGCGaGGUCGGCCaugcucGCcGCGUGCa-- -3' miRNA: 3'- gCGCaUCAGCCGGc-----UGuCGCACGcaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 107355 | 1.06 | 0.004425 |
Target: 5'- cCGCGUAGUCGGCCGACAGCGUGCGUUg -3' miRNA: 3'- -GCGCAUCAGCCGGCUGUCGCACGCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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