Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16088 | 5' | -58.3 | NC_004065.1 | + | 108804 | 0.66 | 0.874185 |
Target: 5'- gGCGUGG-CGGCCGuuCAGCc-GCGg- -3' miRNA: 3'- gCGCAUCaGCCGGCu-GUCGcaCGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 113001 | 0.69 | 0.722324 |
Target: 5'- aGCGUcucGGUCGGCaCGugAGCGcGCa-- -3' miRNA: 3'- gCGCA---UCAGCCG-GCugUCGCaCGcaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 115753 | 0.67 | 0.82895 |
Target: 5'- aCGC--AGUCGGCCGGgaAGCGgagGCGg- -3' miRNA: 3'- -GCGcaUCAGCCGGCUg-UCGCa--CGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 116314 | 0.67 | 0.836939 |
Target: 5'- uGuCGgcGUCGGCggCGGCAGCGgcgacgGCGUc -3' miRNA: 3'- gC-GCauCAGCCG--GCUGUCGCa-----CGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 122674 | 0.72 | 0.576033 |
Target: 5'- aCGCu--GUCGGCCGACuacgcggacacgAGCGUGUGUc -3' miRNA: 3'- -GCGcauCAGCCGGCUG------------UCGCACGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 123624 | 0.68 | 0.812483 |
Target: 5'- aGCGgaagaacuccaGGUCGGCCGACAcCG-GCGUc -3' miRNA: 3'- gCGCa----------UCAGCCGGCUGUcGCaCGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 127481 | 0.66 | 0.894178 |
Target: 5'- --gGUGGUCGGgCG-CGGCGggaGCGUUg -3' miRNA: 3'- gcgCAUCAGCCgGCuGUCGCa--CGCAA- -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 128750 | 0.66 | 0.894178 |
Target: 5'- aGCc--GUCGGCagCGGCAGCGgcaGCGUUg -3' miRNA: 3'- gCGcauCAGCCG--GCUGUCGCa--CGCAA- -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 128888 | 0.69 | 0.750493 |
Target: 5'- -uCGUG--CGGCCGAgGGCGUGCGa- -3' miRNA: 3'- gcGCAUcaGCCGGCUgUCGCACGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 129014 | 0.71 | 0.644647 |
Target: 5'- uCGCGccUGG-CGGCCGACu-CGUGCGUg -3' miRNA: 3'- -GCGC--AUCaGCCGGCUGucGCACGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 135638 | 0.67 | 0.836939 |
Target: 5'- aGCaGUGccUCGGCCGACAGCGaccuagacccucUGCGg- -3' miRNA: 3'- gCG-CAUc-AGCCGGCUGUCGC------------ACGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 136675 | 0.69 | 0.768806 |
Target: 5'- gGCG-GGUCuGGCCGGCGGCGgGCc-- -3' miRNA: 3'- gCGCaUCAG-CCGGCUGUCGCaCGcaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 137860 | 0.66 | 0.894178 |
Target: 5'- cCGCGUcGaUCGccGCCGACAGCGU-CGg- -3' miRNA: 3'- -GCGCAuC-AGC--CGGCUGUCGCAcGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 139902 | 0.68 | 0.777798 |
Target: 5'- cCGCGgGGccucCGGCCGGCGGCGccaGCGg- -3' miRNA: 3'- -GCGCaUCa---GCCGGCUGUCGCa--CGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 164549 | 0.68 | 0.786669 |
Target: 5'- uCGCuGU-GUCGaGCCGGCGGCG-GCGc- -3' miRNA: 3'- -GCG-CAuCAGC-CGGCUGUCGCaCGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 165273 | 0.68 | 0.786669 |
Target: 5'- aGCGcuccUUGGCCGACAGCGaGCGc- -3' miRNA: 3'- gCGCauc-AGCCGGCUGUCGCaCGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 168561 | 0.68 | 0.777798 |
Target: 5'- aGCGgcGgCGGCggCGACAGCGgGCGUc -3' miRNA: 3'- gCGCauCaGCCG--GCUGUCGCaCGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 200786 | 0.66 | 0.900424 |
Target: 5'- gCGCGgcGguggCGGgCGACGGCGUcucggcGCGg- -3' miRNA: 3'- -GCGCauCa---GCCgGCUGUCGCA------CGCaa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 201194 | 0.66 | 0.900424 |
Target: 5'- gCGCGUcccggcucGGgCGGCgCGGCGaCGUGCGUg -3' miRNA: 3'- -GCGCA--------UCaGCCG-GCUGUcGCACGCAa -5' |
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16088 | 5' | -58.3 | NC_004065.1 | + | 209551 | 0.67 | 0.836939 |
Target: 5'- cCGCGggacugaaggAGgccCGGCCGGCugcuggcgGGCGUGCGg- -3' miRNA: 3'- -GCGCa---------UCa--GCCGGCUG--------UCGCACGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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