miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16088 5' -58.3 NC_004065.1 + 107355 1.06 0.004425
Target:  5'- cCGCGUAGUCGGCCGACAGCGUGCGUUg -3'
miRNA:   3'- -GCGCAUCAGCCGGCUGUCGCACGCAA- -5'
16088 5' -58.3 NC_004065.1 + 46164 0.66 0.904669
Target:  5'- uGCGU--UCGGCCacggccaaacacgcGACGGCGUGgGg- -3'
miRNA:   3'- gCGCAucAGCCGG--------------CUGUCGCACgCaa -5'
16088 5' -58.3 NC_004065.1 + 201194 0.66 0.900424
Target:  5'- gCGCGUcccggcucGGgCGGCgCGGCGaCGUGCGUg -3'
miRNA:   3'- -GCGCA--------UCaGCCG-GCUGUcGCACGCAa -5'
16088 5' -58.3 NC_004065.1 + 200786 0.66 0.900424
Target:  5'- gCGCGgcGguggCGGgCGACGGCGUcucggcGCGg- -3'
miRNA:   3'- -GCGCauCa---GCCgGCUGUCGCA------CGCaa -5'
16088 5' -58.3 NC_004065.1 + 67449 0.66 0.900424
Target:  5'- aCGaCGgaccuGUCGGCCGagGCGGCG-GUGUa -3'
miRNA:   3'- -GC-GCau---CAGCCGGC--UGUCGCaCGCAa -5'
16088 5' -58.3 NC_004065.1 + 137860 0.66 0.894178
Target:  5'- cCGCGUcGaUCGccGCCGACAGCGU-CGg- -3'
miRNA:   3'- -GCGCAuC-AGC--CGGCUGUCGCAcGCaa -5'
16088 5' -58.3 NC_004065.1 + 67749 0.66 0.894178
Target:  5'- aGCGgcGcCGcGuCCGACGGCGUGaCGa- -3'
miRNA:   3'- gCGCauCaGC-C-GGCUGUCGCAC-GCaa -5'
16088 5' -58.3 NC_004065.1 + 24962 0.66 0.894178
Target:  5'- aCGaugGGUCGGUCGugGGUGgGCGUc -3'
miRNA:   3'- -GCgcaUCAGCCGGCugUCGCaCGCAa -5'
16088 5' -58.3 NC_004065.1 + 128750 0.66 0.894178
Target:  5'- aGCc--GUCGGCagCGGCAGCGgcaGCGUUg -3'
miRNA:   3'- gCGcauCAGCCG--GCUGUCGCa--CGCAA- -5'
16088 5' -58.3 NC_004065.1 + 106975 0.66 0.88772
Target:  5'- aGCGaGGUCGGCCaugcucGCcGCGUGCa-- -3'
miRNA:   3'- gCGCaUCAGCCGGc-----UGuCGCACGcaa -5'
16088 5' -58.3 NC_004065.1 + 73866 0.67 0.85985
Target:  5'- aGUGUuGaUCGGaCCGGCAGCGccgGUGUUg -3'
miRNA:   3'- gCGCAuC-AGCC-GGCUGUCGCa--CGCAA- -5'
16088 5' -58.3 NC_004065.1 + 113001 0.69 0.722324
Target:  5'- aGCGUcucGGUCGGCaCGugAGCGcGCa-- -3'
miRNA:   3'- gCGCA---UCAGCCG-GCugUCGCaCGcaa -5'
16088 5' -58.3 NC_004065.1 + 128888 0.69 0.750493
Target:  5'- -uCGUG--CGGCCGAgGGCGUGCGa- -3'
miRNA:   3'- gcGCAUcaGCCGGCUgUCGCACGCaa -5'
16088 5' -58.3 NC_004065.1 + 168561 0.68 0.777798
Target:  5'- aGCGgcGgCGGCggCGACAGCGgGCGUc -3'
miRNA:   3'- gCGCauCaGCCG--GCUGUCGCaCGCAa -5'
16088 5' -58.3 NC_004065.1 + 164549 0.68 0.786669
Target:  5'- uCGCuGU-GUCGaGCCGGCGGCG-GCGc- -3'
miRNA:   3'- -GCG-CAuCAGC-CGGCUGUCGCaCGCaa -5'
16088 5' -58.3 NC_004065.1 + 99952 0.68 0.80402
Target:  5'- uCGcCGUAGUCGaccaccGCCG-CGGCGUGCu-- -3'
miRNA:   3'- -GC-GCAUCAGC------CGGCuGUCGCACGcaa -5'
16088 5' -58.3 NC_004065.1 + 123624 0.68 0.812483
Target:  5'- aGCGgaagaacuccaGGUCGGCCGACAcCG-GCGUc -3'
miRNA:   3'- gCGCa----------UCAGCCGGCUGUcGCaCGCAa -5'
16088 5' -58.3 NC_004065.1 + 38121 0.67 0.852395
Target:  5'- uGcCGUAcGUCGcGCCGGacuuCGGCGUGCGc- -3'
miRNA:   3'- gC-GCAU-CAGC-CGGCU----GUCGCACGCaa -5'
16088 5' -58.3 NC_004065.1 + 94421 0.66 0.906456
Target:  5'- cCGCGUGa-CGGCCGucuccCAGCGgcGCGUg -3'
miRNA:   3'- -GCGCAUcaGCCGGCu----GUCGCa-CGCAa -5'
16088 5' -58.3 NC_004065.1 + 28481 0.74 0.481515
Target:  5'- uGUGgcGUCuGGCCGACAGCGccGCGg- -3'
miRNA:   3'- gCGCauCAG-CCGGCUGUCGCa-CGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.