miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1609 3' -51.6 NC_001347.2 + 139320 0.66 0.998172
Target:  5'- cGAUcuGGCGGCGUuGU-GCGCgGCGGUGg -3'
miRNA:   3'- aCUA--UUGCUGCAcCAgCGCG-UGCUAC- -5'
1609 3' -51.6 NC_001347.2 + 172124 0.66 0.998172
Target:  5'- gGGUcccGACGACGaGGUgGCGCAUcuGUGg -3'
miRNA:   3'- aCUA---UUGCUGCaCCAgCGCGUGc-UAC- -5'
1609 3' -51.6 NC_001347.2 + 126643 0.66 0.997828
Target:  5'- ----cACGGCGcUGGcaCGCGCGCGGUu -3'
miRNA:   3'- acuauUGCUGC-ACCa-GCGCGUGCUAc -5'
1609 3' -51.6 NC_001347.2 + 140636 0.66 0.997828
Target:  5'- gGGUGGCGGuCGUGGUgGUGgGggUGGUGg -3'
miRNA:   3'- aCUAUUGCU-GCACCAgCGCgU--GCUAC- -5'
1609 3' -51.6 NC_001347.2 + 1634 0.66 0.997828
Target:  5'- ------gGGCGUGGgcacccCGCGCGCGAc- -3'
miRNA:   3'- acuauugCUGCACCa-----GCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 74700 0.66 0.997431
Target:  5'- cUGAcucuUGGCGAUGgucaUGGcCGUGCGCGAa- -3'
miRNA:   3'- -ACU----AUUGCUGC----ACCaGCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 153874 0.66 0.996976
Target:  5'- cGAgcgGCGACGUGcauUCGCGCAacaGAUc -3'
miRNA:   3'- aCUau-UGCUGCACc--AGCGCGUg--CUAc -5'
1609 3' -51.6 NC_001347.2 + 199779 0.66 0.996976
Target:  5'- --uUGGCGGCGccGGugccgccggucUCGCGCACGAg- -3'
miRNA:   3'- acuAUUGCUGCa-CC-----------AGCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 163628 0.66 0.996976
Target:  5'- cGAgccGCGGCugcccgGGUCGCGCAccagcgucuCGAUGa -3'
miRNA:   3'- aCUau-UGCUGca----CCAGCGCGU---------GCUAC- -5'
1609 3' -51.6 NC_001347.2 + 128460 0.66 0.996976
Target:  5'- ---aAGCGGCGcgacGGcgCGCGCACGcgGg -3'
miRNA:   3'- acuaUUGCUGCa---CCa-GCGCGUGCuaC- -5'
1609 3' -51.6 NC_001347.2 + 150921 0.66 0.996457
Target:  5'- ---cAGCGGCGUGc-CGUGCGCGAa- -3'
miRNA:   3'- acuaUUGCUGCACcaGCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 51427 0.67 0.995866
Target:  5'- aUGAUGGCGGCGauaugGGcUCGCGUuuUGAUa -3'
miRNA:   3'- -ACUAUUGCUGCa----CC-AGCGCGu-GCUAc -5'
1609 3' -51.6 NC_001347.2 + 182413 0.67 0.995197
Target:  5'- cGcgGGCGugGUGGuUCGUGUG-GAUGa -3'
miRNA:   3'- aCuaUUGCugCACC-AGCGCGUgCUAC- -5'
1609 3' -51.6 NC_001347.2 + 163757 0.67 0.994442
Target:  5'- -aGUAGCGguACGUuGUCGCGCACaGUGc -3'
miRNA:   3'- acUAUUGC--UGCAcCAGCGCGUGcUAC- -5'
1609 3' -51.6 NC_001347.2 + 149437 0.67 0.994442
Target:  5'- ---cGACGAcagcuCGUGGcCGCGCuauCGAUGc -3'
miRNA:   3'- acuaUUGCU-----GCACCaGCGCGu--GCUAC- -5'
1609 3' -51.6 NC_001347.2 + 154787 0.67 0.994442
Target:  5'- cUGAUGAUGGCGcauaGGUUacaGCGCGuguCGAUGg -3'
miRNA:   3'- -ACUAUUGCUGCa---CCAG---CGCGU---GCUAC- -5'
1609 3' -51.6 NC_001347.2 + 168535 0.68 0.991589
Target:  5'- ---cGGCGGCGUacagcgGGUCGCGCGCc--- -3'
miRNA:   3'- acuaUUGCUGCA------CCAGCGCGUGcuac -5'
1609 3' -51.6 NC_001347.2 + 161649 0.68 0.990416
Target:  5'- cGAcccGCGGCGUGGaCGCGC-CGuUGg -3'
miRNA:   3'- aCUau-UGCUGCACCaGCGCGuGCuAC- -5'
1609 3' -51.6 NC_001347.2 + 69224 0.68 0.990416
Target:  5'- gGAUA--GACGUGGUCGCcuGCGgGAa- -3'
miRNA:   3'- aCUAUugCUGCACCAGCG--CGUgCUac -5'
1609 3' -51.6 NC_001347.2 + 155480 0.68 0.989117
Target:  5'- cGAUGACGACGgagaGGaggaaaacgaCGUGCAgGAUGa -3'
miRNA:   3'- aCUAUUGCUGCa---CCa---------GCGCGUgCUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.