Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1609 | 3' | -51.6 | NC_001347.2 | + | 149359 | 0.68 | 0.989117 |
Target: 5'- cGAcUGGCGGCagcagGGUCGCGCGuCGAc- -3' miRNA: 3'- aCU-AUUGCUGca---CCAGCGCGU-GCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 16350 | 0.68 | 0.986113 |
Target: 5'- gGGUAccgcACGACGUGGUagcgaugcugcUGCGuCACGGUc -3' miRNA: 3'- aCUAU----UGCUGCACCA-----------GCGC-GUGCUAc -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 108787 | 0.68 | 0.984391 |
Target: 5'- gUGGcacuGCGgcACGUGGUgugCGCGCACGAg- -3' miRNA: 3'- -ACUau--UGC--UGCACCA---GCGCGUGCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 134057 | 0.69 | 0.982511 |
Target: 5'- cUGAUAgauAUGGCGUuguugagcGGUUGUGUugGAUGa -3' miRNA: 3'- -ACUAU---UGCUGCA--------CCAGCGCGugCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 24333 | 0.69 | 0.982511 |
Target: 5'- aUGAUGAagcggcCGugGUGGcCGUGCugGGcUGg -3' miRNA: 3'- -ACUAUU------GCugCACCaGCGCGugCU-AC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 184731 | 0.69 | 0.978247 |
Target: 5'- cGAUGAgGACGUGGcacaGUuCGCGGUGg -3' miRNA: 3'- aCUAUUgCUGCACCag--CGcGUGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 1333 | 0.69 | 0.973259 |
Target: 5'- aGAUGAaCGGCGUGGgCGCG-ACGGa- -3' miRNA: 3'- aCUAUU-GCUGCACCaGCGCgUGCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 174782 | 0.7 | 0.971613 |
Target: 5'- cGGcGGCGACGUGGgucgcgaguucauguUgGCGCGCGAc- -3' miRNA: 3'- aCUaUUGCUGCACC---------------AgCGCGUGCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 116783 | 0.7 | 0.970477 |
Target: 5'- -cGUGACcGCGgGGUCGCGCGCGu-- -3' miRNA: 3'- acUAUUGcUGCaCCAGCGCGUGCuac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 77679 | 0.71 | 0.95101 |
Target: 5'- cGAUAACGACGacuaUGGUCucuacguggauugguGCGUaACGGUGg -3' miRNA: 3'- aCUAUUGCUGC----ACCAG---------------CGCG-UGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 140558 | 0.71 | 0.949354 |
Target: 5'- aGGUGACGACGgGGUucCGgGCgGCGGUGc -3' miRNA: 3'- aCUAUUGCUGCaCCA--GCgCG-UGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 102459 | 0.71 | 0.949354 |
Target: 5'- cGu--ACGACGcgaGGUccCGCGCACGGUGa -3' miRNA: 3'- aCuauUGCUGCa--CCA--GCGCGUGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 198384 | 0.71 | 0.945051 |
Target: 5'- gGGUGGCGcGCG-GGUCGCGCAacaGcgGa -3' miRNA: 3'- aCUAUUGC-UGCaCCAGCGCGUg--CuaC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 159469 | 0.71 | 0.943715 |
Target: 5'- cGAUGACGAUGUcGGcgCGgcggcugcugaacuCGCGCGAUGg -3' miRNA: 3'- aCUAUUGCUGCA-CCa-GC--------------GCGUGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 65721 | 0.72 | 0.930738 |
Target: 5'- cGGUGGCGGCgGUGGaggGCGCGCGGc- -3' miRNA: 3'- aCUAUUGCUG-CACCag-CGCGUGCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 39972 | 0.72 | 0.914295 |
Target: 5'- ---aAGCGACGUGcGgCGCGCACGGc- -3' miRNA: 3'- acuaUUGCUGCAC-CaGCGCGUGCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 73557 | 0.73 | 0.895735 |
Target: 5'- cGGUcccGGCGACGgaugGG-CGCGCACGcgGa -3' miRNA: 3'- aCUA---UUGCUGCa---CCaGCGCGUGCuaC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 15613 | 0.73 | 0.875124 |
Target: 5'- cUGGUGACGACGcguucGUCGaCGCGCGAg- -3' miRNA: 3'- -ACUAUUGCUGCac---CAGC-GCGUGCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 44033 | 0.74 | 0.843853 |
Target: 5'- cGGUGGCGACGgcagcggUGGUgGCGCugGGg- -3' miRNA: 3'- aCUAUUGCUGC-------ACCAgCGCGugCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 115626 | 0.74 | 0.836544 |
Target: 5'- gGAcca-GACGUGGUCGCGC-CGAUc -3' miRNA: 3'- aCUauugCUGCACCAGCGCGuGCUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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