miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1609 3' -51.6 NC_001347.2 + 1333 0.69 0.973259
Target:  5'- aGAUGAaCGGCGUGGgCGCG-ACGGa- -3'
miRNA:   3'- aCUAUU-GCUGCACCaGCGCgUGCUac -5'
1609 3' -51.6 NC_001347.2 + 1634 0.66 0.997828
Target:  5'- ------gGGCGUGGgcacccCGCGCGCGAc- -3'
miRNA:   3'- acuauugCUGCACCa-----GCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 15613 0.73 0.875124
Target:  5'- cUGGUGACGACGcguucGUCGaCGCGCGAg- -3'
miRNA:   3'- -ACUAUUGCUGCac---CAGC-GCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 16350 0.68 0.986113
Target:  5'- gGGUAccgcACGACGUGGUagcgaugcugcUGCGuCACGGUc -3'
miRNA:   3'- aCUAU----UGCUGCACCA-----------GCGC-GUGCUAc -5'
1609 3' -51.6 NC_001347.2 + 24333 0.69 0.982511
Target:  5'- aUGAUGAagcggcCGugGUGGcCGUGCugGGcUGg -3'
miRNA:   3'- -ACUAUU------GCugCACCaGCGCGugCU-AC- -5'
1609 3' -51.6 NC_001347.2 + 39972 0.72 0.914295
Target:  5'- ---aAGCGACGUGcGgCGCGCACGGc- -3'
miRNA:   3'- acuaUUGCUGCAC-CaGCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 44033 0.74 0.843853
Target:  5'- cGGUGGCGACGgcagcggUGGUgGCGCugGGg- -3'
miRNA:   3'- aCUAUUGCUGC-------ACCAgCGCGugCUac -5'
1609 3' -51.6 NC_001347.2 + 51427 0.67 0.995866
Target:  5'- aUGAUGGCGGCGauaugGGcUCGCGUuuUGAUa -3'
miRNA:   3'- -ACUAUUGCUGCa----CC-AGCGCGu-GCUAc -5'
1609 3' -51.6 NC_001347.2 + 65721 0.72 0.930738
Target:  5'- cGGUGGCGGCgGUGGaggGCGCGCGGc- -3'
miRNA:   3'- aCUAUUGCUG-CACCag-CGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 69224 0.68 0.990416
Target:  5'- gGAUA--GACGUGGUCGCcuGCGgGAa- -3'
miRNA:   3'- aCUAUugCUGCACCAGCG--CGUgCUac -5'
1609 3' -51.6 NC_001347.2 + 73557 0.73 0.895735
Target:  5'- cGGUcccGGCGACGgaugGG-CGCGCACGcgGa -3'
miRNA:   3'- aCUA---UUGCUGCa---CCaGCGCGUGCuaC- -5'
1609 3' -51.6 NC_001347.2 + 74700 0.66 0.997431
Target:  5'- cUGAcucuUGGCGAUGgucaUGGcCGUGCGCGAa- -3'
miRNA:   3'- -ACU----AUUGCUGC----ACCaGCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 77679 0.71 0.95101
Target:  5'- cGAUAACGACGacuaUGGUCucuacguggauugguGCGUaACGGUGg -3'
miRNA:   3'- aCUAUUGCUGC----ACCAG---------------CGCG-UGCUAC- -5'
1609 3' -51.6 NC_001347.2 + 102459 0.71 0.949354
Target:  5'- cGu--ACGACGcgaGGUccCGCGCACGGUGa -3'
miRNA:   3'- aCuauUGCUGCa--CCA--GCGCGUGCUAC- -5'
1609 3' -51.6 NC_001347.2 + 108787 0.68 0.984391
Target:  5'- gUGGcacuGCGgcACGUGGUgugCGCGCACGAg- -3'
miRNA:   3'- -ACUau--UGC--UGCACCA---GCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 115626 0.74 0.836544
Target:  5'- gGAcca-GACGUGGUCGCGC-CGAUc -3'
miRNA:   3'- aCUauugCUGCACCAGCGCGuGCUAc -5'
1609 3' -51.6 NC_001347.2 + 116783 0.7 0.970477
Target:  5'- -cGUGACcGCGgGGUCGCGCGCGu-- -3'
miRNA:   3'- acUAUUGcUGCaCCAGCGCGUGCuac -5'
1609 3' -51.6 NC_001347.2 + 126643 0.66 0.997828
Target:  5'- ----cACGGCGcUGGcaCGCGCGCGGUu -3'
miRNA:   3'- acuauUGCUGC-ACCa-GCGCGUGCUAc -5'
1609 3' -51.6 NC_001347.2 + 128460 0.66 0.996976
Target:  5'- ---aAGCGGCGcgacGGcgCGCGCACGcgGg -3'
miRNA:   3'- acuaUUGCUGCa---CCa-GCGCGUGCuaC- -5'
1609 3' -51.6 NC_001347.2 + 134057 0.69 0.982511
Target:  5'- cUGAUAgauAUGGCGUuguugagcGGUUGUGUugGAUGa -3'
miRNA:   3'- -ACUAU---UGCUGCA--------CCAGCGCGugCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.