Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1609 | 3' | -51.6 | NC_001347.2 | + | 139320 | 0.66 | 0.998172 |
Target: 5'- cGAUcuGGCGGCGUuGU-GCGCgGCGGUGg -3' miRNA: 3'- aCUA--UUGCUGCAcCAgCGCG-UGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 140558 | 0.71 | 0.949354 |
Target: 5'- aGGUGACGACGgGGUucCGgGCgGCGGUGc -3' miRNA: 3'- aCUAUUGCUGCaCCA--GCgCG-UGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 140636 | 0.66 | 0.997828 |
Target: 5'- gGGUGGCGGuCGUGGUgGUGgGggUGGUGg -3' miRNA: 3'- aCUAUUGCU-GCACCAgCGCgU--GCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 149359 | 0.68 | 0.989117 |
Target: 5'- cGAcUGGCGGCagcagGGUCGCGCGuCGAc- -3' miRNA: 3'- aCU-AUUGCUGca---CCAGCGCGU-GCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 149437 | 0.67 | 0.994442 |
Target: 5'- ---cGACGAcagcuCGUGGcCGCGCuauCGAUGc -3' miRNA: 3'- acuaUUGCU-----GCACCaGCGCGu--GCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 150921 | 0.66 | 0.996457 |
Target: 5'- ---cAGCGGCGUGc-CGUGCGCGAa- -3' miRNA: 3'- acuaUUGCUGCACcaGCGCGUGCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 152686 | 0.99 | 0.053626 |
Target: 5'- cUGAUAACG-CGUGGUCGCGCACGAUGu -3' miRNA: 3'- -ACUAUUGCuGCACCAGCGCGUGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 153874 | 0.66 | 0.996976 |
Target: 5'- cGAgcgGCGACGUGcauUCGCGCAacaGAUc -3' miRNA: 3'- aCUau-UGCUGCACc--AGCGCGUg--CUAc -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 154787 | 0.67 | 0.994442 |
Target: 5'- cUGAUGAUGGCGcauaGGUUacaGCGCGuguCGAUGg -3' miRNA: 3'- -ACUAUUGCUGCa---CCAG---CGCGU---GCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 155480 | 0.68 | 0.989117 |
Target: 5'- cGAUGACGACGgagaGGaggaaaacgaCGUGCAgGAUGa -3' miRNA: 3'- aCUAUUGCUGCa---CCa---------GCGCGUgCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 159469 | 0.71 | 0.943715 |
Target: 5'- cGAUGACGAUGUcGGcgCGgcggcugcugaacuCGCGCGAUGg -3' miRNA: 3'- aCUAUUGCUGCA-CCa-GC--------------GCGUGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 161649 | 0.68 | 0.990416 |
Target: 5'- cGAcccGCGGCGUGGaCGCGC-CGuUGg -3' miRNA: 3'- aCUau-UGCUGCACCaGCGCGuGCuAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 163628 | 0.66 | 0.996976 |
Target: 5'- cGAgccGCGGCugcccgGGUCGCGCAccagcgucuCGAUGa -3' miRNA: 3'- aCUau-UGCUGca----CCAGCGCGU---------GCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 163757 | 0.67 | 0.994442 |
Target: 5'- -aGUAGCGguACGUuGUCGCGCACaGUGc -3' miRNA: 3'- acUAUUGC--UGCAcCAGCGCGUGcUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 168535 | 0.68 | 0.991589 |
Target: 5'- ---cGGCGGCGUacagcgGGUCGCGCGCc--- -3' miRNA: 3'- acuaUUGCUGCA------CCAGCGCGUGcuac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 172124 | 0.66 | 0.998172 |
Target: 5'- gGGUcccGACGACGaGGUgGCGCAUcuGUGg -3' miRNA: 3'- aCUA---UUGCUGCaCCAgCGCGUGc-UAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 174782 | 0.7 | 0.971613 |
Target: 5'- cGGcGGCGACGUGGgucgcgaguucauguUgGCGCGCGAc- -3' miRNA: 3'- aCUaUUGCUGCACC---------------AgCGCGUGCUac -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 182413 | 0.67 | 0.995197 |
Target: 5'- cGcgGGCGugGUGGuUCGUGUG-GAUGa -3' miRNA: 3'- aCuaUUGCugCACC-AGCGCGUgCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 184731 | 0.69 | 0.978247 |
Target: 5'- cGAUGAgGACGUGGcacaGUuCGCGGUGg -3' miRNA: 3'- aCUAUUgCUGCACCag--CGcGUGCUAC- -5' |
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1609 | 3' | -51.6 | NC_001347.2 | + | 198384 | 0.71 | 0.945051 |
Target: 5'- gGGUGGCGcGCG-GGUCGCGCAacaGcgGa -3' miRNA: 3'- aCUAUUGC-UGCaCCAGCGCGUg--CuaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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