miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1609 3' -51.6 NC_001347.2 + 199779 0.66 0.996976
Target:  5'- --uUGGCGGCGccGGugccgccggucUCGCGCACGAg- -3'
miRNA:   3'- acuAUUGCUGCa-CC-----------AGCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 198384 0.71 0.945051
Target:  5'- gGGUGGCGcGCG-GGUCGCGCAacaGcgGa -3'
miRNA:   3'- aCUAUUGC-UGCaCCAGCGCGUg--CuaC- -5'
1609 3' -51.6 NC_001347.2 + 184731 0.69 0.978247
Target:  5'- cGAUGAgGACGUGGcacaGUuCGCGGUGg -3'
miRNA:   3'- aCUAUUgCUGCACCag--CGcGUGCUAC- -5'
1609 3' -51.6 NC_001347.2 + 182413 0.67 0.995197
Target:  5'- cGcgGGCGugGUGGuUCGUGUG-GAUGa -3'
miRNA:   3'- aCuaUUGCugCACC-AGCGCGUgCUAC- -5'
1609 3' -51.6 NC_001347.2 + 174782 0.7 0.971613
Target:  5'- cGGcGGCGACGUGGgucgcgaguucauguUgGCGCGCGAc- -3'
miRNA:   3'- aCUaUUGCUGCACC---------------AgCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 172124 0.66 0.998172
Target:  5'- gGGUcccGACGACGaGGUgGCGCAUcuGUGg -3'
miRNA:   3'- aCUA---UUGCUGCaCCAgCGCGUGc-UAC- -5'
1609 3' -51.6 NC_001347.2 + 168535 0.68 0.991589
Target:  5'- ---cGGCGGCGUacagcgGGUCGCGCGCc--- -3'
miRNA:   3'- acuaUUGCUGCA------CCAGCGCGUGcuac -5'
1609 3' -51.6 NC_001347.2 + 163757 0.67 0.994442
Target:  5'- -aGUAGCGguACGUuGUCGCGCACaGUGc -3'
miRNA:   3'- acUAUUGC--UGCAcCAGCGCGUGcUAC- -5'
1609 3' -51.6 NC_001347.2 + 163628 0.66 0.996976
Target:  5'- cGAgccGCGGCugcccgGGUCGCGCAccagcgucuCGAUGa -3'
miRNA:   3'- aCUau-UGCUGca----CCAGCGCGU---------GCUAC- -5'
1609 3' -51.6 NC_001347.2 + 161649 0.68 0.990416
Target:  5'- cGAcccGCGGCGUGGaCGCGC-CGuUGg -3'
miRNA:   3'- aCUau-UGCUGCACCaGCGCGuGCuAC- -5'
1609 3' -51.6 NC_001347.2 + 159469 0.71 0.943715
Target:  5'- cGAUGACGAUGUcGGcgCGgcggcugcugaacuCGCGCGAUGg -3'
miRNA:   3'- aCUAUUGCUGCA-CCa-GC--------------GCGUGCUAC- -5'
1609 3' -51.6 NC_001347.2 + 155480 0.68 0.989117
Target:  5'- cGAUGACGACGgagaGGaggaaaacgaCGUGCAgGAUGa -3'
miRNA:   3'- aCUAUUGCUGCa---CCa---------GCGCGUgCUAC- -5'
1609 3' -51.6 NC_001347.2 + 154787 0.67 0.994442
Target:  5'- cUGAUGAUGGCGcauaGGUUacaGCGCGuguCGAUGg -3'
miRNA:   3'- -ACUAUUGCUGCa---CCAG---CGCGU---GCUAC- -5'
1609 3' -51.6 NC_001347.2 + 153874 0.66 0.996976
Target:  5'- cGAgcgGCGACGUGcauUCGCGCAacaGAUc -3'
miRNA:   3'- aCUau-UGCUGCACc--AGCGCGUg--CUAc -5'
1609 3' -51.6 NC_001347.2 + 152686 0.99 0.053626
Target:  5'- cUGAUAACG-CGUGGUCGCGCACGAUGu -3'
miRNA:   3'- -ACUAUUGCuGCACCAGCGCGUGCUAC- -5'
1609 3' -51.6 NC_001347.2 + 150921 0.66 0.996457
Target:  5'- ---cAGCGGCGUGc-CGUGCGCGAa- -3'
miRNA:   3'- acuaUUGCUGCACcaGCGCGUGCUac -5'
1609 3' -51.6 NC_001347.2 + 149437 0.67 0.994442
Target:  5'- ---cGACGAcagcuCGUGGcCGCGCuauCGAUGc -3'
miRNA:   3'- acuaUUGCU-----GCACCaGCGCGu--GCUAC- -5'
1609 3' -51.6 NC_001347.2 + 149359 0.68 0.989117
Target:  5'- cGAcUGGCGGCagcagGGUCGCGCGuCGAc- -3'
miRNA:   3'- aCU-AUUGCUGca---CCAGCGCGU-GCUac -5'
1609 3' -51.6 NC_001347.2 + 140636 0.66 0.997828
Target:  5'- gGGUGGCGGuCGUGGUgGUGgGggUGGUGg -3'
miRNA:   3'- aCUAUUGCU-GCACCAgCGCgU--GCUAC- -5'
1609 3' -51.6 NC_001347.2 + 140558 0.71 0.949354
Target:  5'- aGGUGACGACGgGGUucCGgGCgGCGGUGc -3'
miRNA:   3'- aCUAUUGCUGCaCCA--GCgCG-UGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.