miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1609 5' -58.2 NC_001347.2 + 80380 0.65 0.905555
Target:  5'- cUC-UCGCGC-CCagaccuccacgcaaGCCGUGAGCAUg- -3'
miRNA:   3'- cAGaAGCGCGcGG--------------CGGCACUCGUAga -5'
1609 5' -58.2 NC_001347.2 + 124755 0.66 0.886653
Target:  5'- uGUUcaCGCGgaggacagcaaggcCGCCGCCGUGGGUuUCUu -3'
miRNA:   3'- -CAGaaGCGC--------------GCGGCGGCACUCGuAGA- -5'
1609 5' -58.2 NC_001347.2 + 182127 0.66 0.881968
Target:  5'- gGUCUUCGaCGuCGCUGCCGU-AGCu--- -3'
miRNA:   3'- -CAGAAGC-GC-GCGGCGGCAcUCGuaga -5'
1609 5' -58.2 NC_001347.2 + 38852 0.66 0.875102
Target:  5'- cGUCcgcgUCGCGCGCCGCU---AGgAUCa -3'
miRNA:   3'- -CAGa---AGCGCGCGGCGGcacUCgUAGa -5'
1609 5' -58.2 NC_001347.2 + 168551 0.66 0.875102
Target:  5'- ---gUCGCGCGCCGucuguaCCGUG-GCGUg- -3'
miRNA:   3'- cagaAGCGCGCGGC------GGCACuCGUAga -5'
1609 5' -58.2 NC_001347.2 + 196963 0.67 0.853309
Target:  5'- ---gUCGCGCGCCGCCGacgcccGAgacggcgcGCGUCc -3'
miRNA:   3'- cagaAGCGCGCGGCGGCa-----CU--------CGUAGa -5'
1609 5' -58.2 NC_001347.2 + 40530 0.67 0.853309
Target:  5'- -gUUUCgGCGCGCUGCCG-GuGCGUUc -3'
miRNA:   3'- caGAAG-CGCGCGGCGGCaCuCGUAGa -5'
1609 5' -58.2 NC_001347.2 + 97518 0.67 0.853309
Target:  5'- ----gCGCGCGCCGCCGaGAuuCGUCg -3'
miRNA:   3'- cagaaGCGCGCGGCGGCaCUc-GUAGa -5'
1609 5' -58.2 NC_001347.2 + 76491 0.68 0.813353
Target:  5'- ---gUCGCGUGUCGCCcaGGGCGUUg -3'
miRNA:   3'- cagaAGCGCGCGGCGGcaCUCGUAGa -5'
1609 5' -58.2 NC_001347.2 + 2483 0.68 0.78749
Target:  5'- ----cCGCGCGCCGCgcUGUGGGCGc-- -3'
miRNA:   3'- cagaaGCGCGCGGCG--GCACUCGUaga -5'
1609 5' -58.2 NC_001347.2 + 168475 0.69 0.732476
Target:  5'- cGUCUcCGC-CGCCGUCGUGcuGGUGUCg -3'
miRNA:   3'- -CAGAaGCGcGCGGCGGCAC--UCGUAGa -5'
1609 5' -58.2 NC_001347.2 + 191457 0.7 0.713404
Target:  5'- cUCggCGUaCGCCGCCuUGGGCGUCa -3'
miRNA:   3'- cAGaaGCGcGCGGCGGcACUCGUAGa -5'
1609 5' -58.2 NC_001347.2 + 170774 0.7 0.684333
Target:  5'- uGUUUUUGCGCaUCGCCGUG-GCGUUg -3'
miRNA:   3'- -CAGAAGCGCGcGGCGGCACuCGUAGa -5'
1609 5' -58.2 NC_001347.2 + 98482 0.71 0.625314
Target:  5'- aUCUUgGUGUG-CGCCGUGAGguUCUu -3'
miRNA:   3'- cAGAAgCGCGCgGCGGCACUCguAGA- -5'
1609 5' -58.2 NC_001347.2 + 152728 1.08 0.003237
Target:  5'- aGUCUUCGCGCGCCGCCGUGAGCAUCUg -3'
miRNA:   3'- -CAGAAGCGCGCGGCGGCACUCGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.