Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16092 | 3' | -56.4 | NC_004065.1 | + | 109304 | 1.06 | 0.005495 |
Target: 5'- gAACGAUCCCCCCAUCUCCUACUCCACc -3' miRNA: 3'- -UUGCUAGGGGGGUAGAGGAUGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 19837 | 0.76 | 0.426366 |
Target: 5'- cACGcUCCUCCCGUCUCCgcggagUACUCCAUc -3' miRNA: 3'- uUGCuAGGGGGGUAGAGG------AUGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 223919 | 0.76 | 0.45294 |
Target: 5'- uGAUGGUUCCUCCAUCUCCg--UCCGCa -3' miRNA: 3'- -UUGCUAGGGGGGUAGAGGaugAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 67688 | 0.76 | 0.461997 |
Target: 5'- cGGCGggCCCUCCAUCUCUUcUUCCGCc -3' miRNA: 3'- -UUGCuaGGGGGGUAGAGGAuGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 87289 | 0.75 | 0.517238 |
Target: 5'- -cUGAUCgcaauauCCCCCAUaUCCUGCUCCACc -3' miRNA: 3'- uuGCUAG-------GGGGGUAgAGGAUGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 99727 | 0.72 | 0.636976 |
Target: 5'- aGGCGGUUCCCCUcucGUCgUCCUccucgcGCUCCACc -3' miRNA: 3'- -UUGCUAGGGGGG---UAG-AGGA------UGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 37487 | 0.72 | 0.677034 |
Target: 5'- uAACGAgUCCUUCGUCUCCgacgACUCCAUc -3' miRNA: 3'- -UUGCUaGGGGGGUAGAGGa---UGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 168664 | 0.71 | 0.716522 |
Target: 5'- cGCGAggagaCCCCCAUCUCCguCUUCGCc -3' miRNA: 3'- uUGCUag---GGGGGUAGAGGauGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 164963 | 0.71 | 0.726242 |
Target: 5'- cGCGAUCCCCCCucgccgccCUCCUcCUCguCg -3' miRNA: 3'- uUGCUAGGGGGGua------GAGGAuGAGguG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 2778 | 0.7 | 0.754898 |
Target: 5'- gGACGA-CCUCUCAUCUCCUuC-CCGCu -3' miRNA: 3'- -UUGCUaGGGGGGUAGAGGAuGaGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 159050 | 0.7 | 0.767964 |
Target: 5'- cAGCGAUUCCCucgugugcuccggcgCCGUCUCCaacauCUCCGCc -3' miRNA: 3'- -UUGCUAGGGG---------------GGUAGAGGau---GAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 191491 | 0.7 | 0.773495 |
Target: 5'- cGCGuGUCCCCCCAgguucUCgugCCUcgGCUCCAg -3' miRNA: 3'- uUGC-UAGGGGGGU-----AGa--GGA--UGAGGUg -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 29155 | 0.7 | 0.779893 |
Target: 5'- cGACGAUUcgccaccgcccgcgCCCCCGUCgacgCCgaACUCCACc -3' miRNA: 3'- -UUGCUAG--------------GGGGGUAGa---GGa-UGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 107125 | 0.69 | 0.817714 |
Target: 5'- cGCGGUgaUCCCCAUCcCCUACcgCCACc -3' miRNA: 3'- uUGCUAg-GGGGGUAGaGGAUGa-GGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 76165 | 0.69 | 0.817714 |
Target: 5'- aAGCGGUCCUgCCG-CUCCUacACUCC-Ca -3' miRNA: 3'- -UUGCUAGGGgGGUaGAGGA--UGAGGuG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 138883 | 0.68 | 0.850221 |
Target: 5'- -----gCCCCCCGUCUUCUACgaccCCAUc -3' miRNA: 3'- uugcuaGGGGGGUAGAGGAUGa---GGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 116590 | 0.68 | 0.850221 |
Target: 5'- cGGCGggCCCCCCGg--CCgccGCUCUGCg -3' miRNA: 3'- -UUGCuaGGGGGGUagaGGa--UGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 44703 | 0.68 | 0.857888 |
Target: 5'- gAGCGGuuUCCCCUCGuucUCUCCgcccaagACUCCGa -3' miRNA: 3'- -UUGCU--AGGGGGGU---AGAGGa------UGAGGUg -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 150073 | 0.68 | 0.865358 |
Target: 5'- -cCGGUCCCgCU-UCUCCaucaGCUCCACg -3' miRNA: 3'- uuGCUAGGGgGGuAGAGGa---UGAGGUG- -5' |
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16092 | 3' | -56.4 | NC_004065.1 | + | 96179 | 0.68 | 0.872627 |
Target: 5'- cGACGAagCCCagcgaaaccaCGUCUCCUauacACUCCGCc -3' miRNA: 3'- -UUGCUagGGGg---------GUAGAGGA----UGAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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