miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16092 3' -56.4 NC_004065.1 + 97108 0.68 0.879688
Target:  5'- cGACGGUCUCCUCcucCUCCUcuGCugUCCACa -3'
miRNA:   3'- -UUGCUAGGGGGGua-GAGGA--UG--AGGUG- -5'
16092 3' -56.4 NC_004065.1 + 26387 0.68 0.879688
Target:  5'- gGGCGuuccccAUgCCCCCGcCUCCaACUCCGCc -3'
miRNA:   3'- -UUGC------UAgGGGGGUaGAGGaUGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 96179 0.68 0.872627
Target:  5'- cGACGAagCCCagcgaaaccaCGUCUCCUauacACUCCGCc -3'
miRNA:   3'- -UUGCUagGGGg---------GUAGAGGA----UGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 150073 0.68 0.865358
Target:  5'- -cCGGUCCCgCU-UCUCCaucaGCUCCACg -3'
miRNA:   3'- uuGCUAGGGgGGuAGAGGa---UGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 44703 0.68 0.857888
Target:  5'- gAGCGGuuUCCCCUCGuucUCUCCgcccaagACUCCGa -3'
miRNA:   3'- -UUGCU--AGGGGGGU---AGAGGa------UGAGGUg -5'
16092 3' -56.4 NC_004065.1 + 116590 0.68 0.850221
Target:  5'- cGGCGggCCCCCCGg--CCgccGCUCUGCg -3'
miRNA:   3'- -UUGCuaGGGGGGUagaGGa--UGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 138883 0.68 0.850221
Target:  5'- -----gCCCCCCGUCUUCUACgaccCCAUc -3'
miRNA:   3'- uugcuaGGGGGGUAGAGGAUGa---GGUG- -5'
16092 3' -56.4 NC_004065.1 + 76165 0.69 0.817714
Target:  5'- aAGCGGUCCUgCCG-CUCCUacACUCC-Ca -3'
miRNA:   3'- -UUGCUAGGGgGGUaGAGGA--UGAGGuG- -5'
16092 3' -56.4 NC_004065.1 + 107125 0.69 0.817714
Target:  5'- cGCGGUgaUCCCCAUCcCCUACcgCCACc -3'
miRNA:   3'- uUGCUAg-GGGGGUAGaGGAUGa-GGUG- -5'
16092 3' -56.4 NC_004065.1 + 29155 0.7 0.779893
Target:  5'- cGACGAUUcgccaccgcccgcgCCCCCGUCgacgCCgaACUCCACc -3'
miRNA:   3'- -UUGCUAG--------------GGGGGUAGa---GGa-UGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 191491 0.7 0.773495
Target:  5'- cGCGuGUCCCCCCAgguucUCgugCCUcgGCUCCAg -3'
miRNA:   3'- uUGC-UAGGGGGGU-----AGa--GGA--UGAGGUg -5'
16092 3' -56.4 NC_004065.1 + 159050 0.7 0.767964
Target:  5'- cAGCGAUUCCCucgugugcuccggcgCCGUCUCCaacauCUCCGCc -3'
miRNA:   3'- -UUGCUAGGGG---------------GGUAGAGGau---GAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 2778 0.7 0.754898
Target:  5'- gGACGA-CCUCUCAUCUCCUuC-CCGCu -3'
miRNA:   3'- -UUGCUaGGGGGGUAGAGGAuGaGGUG- -5'
16092 3' -56.4 NC_004065.1 + 164963 0.71 0.726242
Target:  5'- cGCGAUCCCCCCucgccgccCUCCUcCUCguCg -3'
miRNA:   3'- uUGCUAGGGGGGua------GAGGAuGAGguG- -5'
16092 3' -56.4 NC_004065.1 + 168664 0.71 0.716522
Target:  5'- cGCGAggagaCCCCCAUCUCCguCUUCGCc -3'
miRNA:   3'- uUGCUag---GGGGGUAGAGGauGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 37487 0.72 0.677034
Target:  5'- uAACGAgUCCUUCGUCUCCgacgACUCCAUc -3'
miRNA:   3'- -UUGCUaGGGGGGUAGAGGa---UGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 99727 0.72 0.636976
Target:  5'- aGGCGGUUCCCCUcucGUCgUCCUccucgcGCUCCACc -3'
miRNA:   3'- -UUGCUAGGGGGG---UAG-AGGA------UGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 87289 0.75 0.517238
Target:  5'- -cUGAUCgcaauauCCCCCAUaUCCUGCUCCACc -3'
miRNA:   3'- uuGCUAG-------GGGGGUAgAGGAUGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 67688 0.76 0.461997
Target:  5'- cGGCGggCCCUCCAUCUCUUcUUCCGCc -3'
miRNA:   3'- -UUGCuaGGGGGGUAGAGGAuGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 223919 0.76 0.45294
Target:  5'- uGAUGGUUCCUCCAUCUCCg--UCCGCa -3'
miRNA:   3'- -UUGCUAGGGGGGUAGAGGaugAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.