miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16092 3' -56.4 NC_004065.1 + 2778 0.7 0.754898
Target:  5'- gGACGA-CCUCUCAUCUCCUuC-CCGCu -3'
miRNA:   3'- -UUGCUaGGGGGGUAGAGGAuGaGGUG- -5'
16092 3' -56.4 NC_004065.1 + 19837 0.76 0.426366
Target:  5'- cACGcUCCUCCCGUCUCCgcggagUACUCCAUc -3'
miRNA:   3'- uUGCuAGGGGGGUAGAGG------AUGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 25671 0.67 0.886537
Target:  5'- uACGugccUCCCCCCAUCacgacgUCCccgACUaCCACg -3'
miRNA:   3'- uUGCu---AGGGGGGUAG------AGGa--UGA-GGUG- -5'
16092 3' -56.4 NC_004065.1 + 26387 0.68 0.879688
Target:  5'- gGGCGuuccccAUgCCCCCGcCUCCaACUCCGCc -3'
miRNA:   3'- -UUGC------UAgGGGGGUaGAGGaUGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 29155 0.7 0.779893
Target:  5'- cGACGAUUcgccaccgcccgcgCCCCCGUCgacgCCgaACUCCACc -3'
miRNA:   3'- -UUGCUAG--------------GGGGGUAGa---GGa-UGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 32297 0.66 0.922434
Target:  5'- -uCGGUCUCCUCGUCggagcccgacgaaUCCUugUCCGa -3'
miRNA:   3'- uuGCUAGGGGGGUAG-------------AGGAugAGGUg -5'
16092 3' -56.4 NC_004065.1 + 37487 0.72 0.677034
Target:  5'- uAACGAgUCCUUCGUCUCCgacgACUCCAUc -3'
miRNA:   3'- -UUGCUaGGGGGGUAGAGGa---UGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 44703 0.68 0.857888
Target:  5'- gAGCGGuuUCCCCUCGuucUCUCCgcccaagACUCCGa -3'
miRNA:   3'- -UUGCU--AGGGGGGU---AGAGGa------UGAGGUg -5'
16092 3' -56.4 NC_004065.1 + 47780 0.66 0.933295
Target:  5'- cGACGAggagCCCCUCgAUCUCCU-CgggCCAg -3'
miRNA:   3'- -UUGCUa---GGGGGG-UAGAGGAuGa--GGUg -5'
16092 3' -56.4 NC_004065.1 + 50513 0.66 0.938111
Target:  5'- gGGCG-UCCCCUCGUucCUUCUGCUCgaaGCa -3'
miRNA:   3'- -UUGCuAGGGGGGUA--GAGGAUGAGg--UG- -5'
16092 3' -56.4 NC_004065.1 + 51830 0.67 0.916905
Target:  5'- gGAUGcgCCCCaaccuguCCAUCUCCUGCcCCu- -3'
miRNA:   3'- -UUGCuaGGGG-------GGUAGAGGAUGaGGug -5'
16092 3' -56.4 NC_004065.1 + 52366 0.67 0.917468
Target:  5'- uAUGuGUCCCCcguCCGUCUCCggUUCCACu -3'
miRNA:   3'- uUGC-UAGGGG---GGUAGAGGauGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 62530 0.67 0.911733
Target:  5'- gAGgGAaugCCCCCCAUUUCC---UCCGCa -3'
miRNA:   3'- -UUgCUa--GGGGGGUAGAGGaugAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 63319 0.66 0.94225
Target:  5'- cGACGAgUUCCUggagcagCUGUC-CCUGCUCCACa -3'
miRNA:   3'- -UUGCU-AGGGG-------GGUAGaGGAUGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 65285 0.66 0.922974
Target:  5'- -uCGucuUCCCCUCcuaCUCCUGCUCCu- -3'
miRNA:   3'- uuGCu--AGGGGGGua-GAGGAUGAGGug -5'
16092 3' -56.4 NC_004065.1 + 67688 0.76 0.461997
Target:  5'- cGGCGggCCCUCCAUCUCUUcUUCCGCc -3'
miRNA:   3'- -UUGCuaGGGGGGUAGAGGAuGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 76165 0.69 0.817714
Target:  5'- aAGCGGUCCUgCCG-CUCCUacACUCC-Ca -3'
miRNA:   3'- -UUGCUAGGGgGGUaGAGGA--UGAGGuG- -5'
16092 3' -56.4 NC_004065.1 + 80949 0.66 0.933295
Target:  5'- aGACGAUCgugacgacgaCCCCgAUCggCCUGCcgCCGCc -3'
miRNA:   3'- -UUGCUAG----------GGGGgUAGa-GGAUGa-GGUG- -5'
16092 3' -56.4 NC_004065.1 + 87289 0.75 0.517238
Target:  5'- -cUGAUCgcaauauCCCCCAUaUCCUGCUCCACc -3'
miRNA:   3'- uuGCUAG-------GGGGGUAgAGGAUGAGGUG- -5'
16092 3' -56.4 NC_004065.1 + 90382 0.66 0.938111
Target:  5'- cGACGAgUCCuuCCCCGUCgucgacacgCCaccGCUCCGCa -3'
miRNA:   3'- -UUGCU-AGG--GGGGUAGa--------GGa--UGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.