miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16092 5' -56.3 NC_004065.1 + 127474 0.66 0.957376
Target:  5'- cCGGGGAGgUGGUCGggcgcggcgGGAgCGUUgUCc -3'
miRNA:   3'- cGCCCCUCgACCAGC---------UCUgGUAGaAG- -5'
16092 5' -56.3 NC_004065.1 + 167599 0.66 0.957376
Target:  5'- uGUGGGu-GCUGG-CGGGGCUGUCg-- -3'
miRNA:   3'- -CGCCCcuCGACCaGCUCUGGUAGaag -5'
16092 5' -56.3 NC_004065.1 + 197689 0.66 0.953639
Target:  5'- aGC-GGGAGCUcGUCGAGcUCGUCaUCu -3'
miRNA:   3'- -CGcCCCUCGAcCAGCUCuGGUAGaAG- -5'
16092 5' -56.3 NC_004065.1 + 135725 0.66 0.953639
Target:  5'- gGCGGGGAuCUGGUgGAG-CUGUUg-- -3'
miRNA:   3'- -CGCCCCUcGACCAgCUCuGGUAGaag -5'
16092 5' -56.3 NC_004065.1 + 161025 0.66 0.949688
Target:  5'- gGCGGcaucgacgugcaGGGGCcGGUCGAcGCUAUCUaUCg -3'
miRNA:   3'- -CGCC------------CCUCGaCCAGCUcUGGUAGA-AG- -5'
16092 5' -56.3 NC_004065.1 + 62221 0.66 0.945519
Target:  5'- cCGGGGAGCgGGaaUCGGGAUaggaGUCg-- -3'
miRNA:   3'- cGCCCCUCGaCC--AGCUCUGg---UAGaag -5'
16092 5' -56.3 NC_004065.1 + 108629 0.66 0.945518
Target:  5'- gGCGGGcAGCUGGUgcuGAUCGUgUUCu -3'
miRNA:   3'- -CGCCCcUCGACCAgcuCUGGUAgAAG- -5'
16092 5' -56.3 NC_004065.1 + 27858 0.66 0.936516
Target:  5'- cGCGGGGcgaaCUGGUCGAGAUgGa---- -3'
miRNA:   3'- -CGCCCCuc--GACCAGCUCUGgUagaag -5'
16092 5' -56.3 NC_004065.1 + 42837 0.66 0.936516
Target:  5'- uGCGGaGGGUcGGUCGAGACCccUCg-- -3'
miRNA:   3'- -CGCCcCUCGaCCAGCUCUGGu-AGaag -5'
16092 5' -56.3 NC_004065.1 + 106274 0.66 0.936516
Target:  5'- cGCGGcgcaccgaGGuGCUGGacUCgGAGGCCAUCUc- -3'
miRNA:   3'- -CGCC--------CCuCGACC--AG-CUCUGGUAGAag -5'
16092 5' -56.3 NC_004065.1 + 179558 0.67 0.93168
Target:  5'- gGUGGGGAGCUGGgcUUGuGGAUUcaCUUCu -3'
miRNA:   3'- -CGCCCCUCGACC--AGC-UCUGGuaGAAG- -5'
16092 5' -56.3 NC_004065.1 + 146581 0.67 0.926619
Target:  5'- cGCGGGuaaggggaucGGGgUGGccaUCGGGGCCGUCggCg -3'
miRNA:   3'- -CGCCC----------CUCgACC---AGCUCUGGUAGaaG- -5'
16092 5' -56.3 NC_004065.1 + 173561 0.67 0.921333
Target:  5'- gGCGGGGAGgUcGGUCGAucaCGUCguUUCg -3'
miRNA:   3'- -CGCCCCUCgA-CCAGCUcugGUAG--AAG- -5'
16092 5' -56.3 NC_004065.1 + 132916 0.67 0.921332
Target:  5'- aGCaGaGGAGgaGGagGAGACCGUCg-- -3'
miRNA:   3'- -CGcC-CCUCgaCCagCUCUGGUAGaag -5'
16092 5' -56.3 NC_004065.1 + 216456 0.67 0.920791
Target:  5'- cGCGGGcGAacGCUGGauagguuUCGu--CCAUCUUCg -3'
miRNA:   3'- -CGCCC-CU--CGACC-------AGCucuGGUAGAAG- -5'
16092 5' -56.3 NC_004065.1 + 91769 0.67 0.915822
Target:  5'- aCGGGGgcgaGGCUGGa-GAGAUCGUCgUCc -3'
miRNA:   3'- cGCCCC----UCGACCagCUCUGGUAGaAG- -5'
16092 5' -56.3 NC_004065.1 + 28569 0.67 0.910087
Target:  5'- cGCGGGGAGCguccGGcUCGAgcccccacccGACCAggagCUg- -3'
miRNA:   3'- -CGCCCCUCGa---CC-AGCU----------CUGGUa---GAag -5'
16092 5' -56.3 NC_004065.1 + 213890 0.67 0.910087
Target:  5'- cGCGGGGuuCUGGUCuGGGuCUAUCcuaUCg -3'
miRNA:   3'- -CGCCCCucGACCAG-CUCuGGUAGa--AG- -5'
16092 5' -56.3 NC_004065.1 + 56968 0.68 0.90413
Target:  5'- cGCGGGGAcGCUGGU-GAuguuCCGUCg-- -3'
miRNA:   3'- -CGCCCCU-CGACCAgCUcu--GGUAGaag -5'
16092 5' -56.3 NC_004065.1 + 136576 0.68 0.891558
Target:  5'- cCGGGGAGCUGGUCcu-GCgGUCc-- -3'
miRNA:   3'- cGCCCCUCGACCAGcucUGgUAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.