Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16092 | 5' | -56.3 | NC_004065.1 | + | 77307 | 0.68 | 0.884949 |
Target: 5'- ---aGGAGC-GGaUCGuGACCAUCUUCg -3' miRNA: 3'- cgccCCUCGaCC-AGCuCUGGUAGAAG- -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 7063 | 0.69 | 0.838658 |
Target: 5'- uGUcGGGAGCUGGUCGuucgcgcugcccgaAGGCCGUgaUUUCc -3' miRNA: 3'- -CGcCCCUCGACCAGC--------------UCUGGUA--GAAG- -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 136260 | 0.69 | 0.824903 |
Target: 5'- aGCGGGGcGCUGGUCuGGGgaGCCAa---- -3' miRNA: 3'- -CGCCCCuCGACCAG-CUC--UGGUagaag -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 136615 | 0.7 | 0.790722 |
Target: 5'- uGCGGGGcGCUGGUcCGAGGCgGcggUCc -3' miRNA: 3'- -CGCCCCuCGACCA-GCUCUGgUagaAG- -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 119529 | 0.71 | 0.772794 |
Target: 5'- cGCGGGGAcgUGGUCGAgGGCCAg---- -3' miRNA: 3'- -CGCCCCUcgACCAGCU-CUGGUagaag -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 83123 | 0.71 | 0.763647 |
Target: 5'- cGCGGGGAGCUGuGggCGAGGCguuggaggaaagCGUCg-- -3' miRNA: 3'- -CGCCCCUCGAC-Ca-GCUCUG------------GUAGaag -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 185334 | 0.71 | 0.745034 |
Target: 5'- -aGGGGAaaccgcuCUGGUCGAcGACCAUCgcUUCg -3' miRNA: 3'- cgCCCCUc------GACCAGCU-CUGGUAG--AAG- -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 136306 | 0.71 | 0.745034 |
Target: 5'- cCGGGGAGCUGGUCcugGAGGuCCGg---- -3' miRNA: 3'- cGCCCCUCGACCAG---CUCU-GGUagaag -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 43631 | 0.71 | 0.735584 |
Target: 5'- aCGGGGuGCUGGUCGcuguagagGGACUGUCc-- -3' miRNA: 3'- cGCCCCuCGACCAGC--------UCUGGUAGaag -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 32857 | 0.71 | 0.734635 |
Target: 5'- cGCGGGGAGCuggcgucccUGGUCGAgaggcgcgccggcGAgCGUCUg- -3' miRNA: 3'- -CGCCCCUCG---------ACCAGCU-------------CUgGUAGAag -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 136410 | 0.73 | 0.627869 |
Target: 5'- cCGGGGAGCUGGUCcugGGGGCCc----- -3' miRNA: 3'- cGCCCCUCGACCAG---CUCUGGuagaag -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 136503 | 0.73 | 0.627869 |
Target: 5'- cCGGGGAGCUGGUCcGGGaaGCCAggCgggUCc -3' miRNA: 3'- cGCCCCUCGACCAG-CUC--UGGUa-Ga--AG- -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 131652 | 0.74 | 0.578406 |
Target: 5'- uGUGGcGGAGCUGGUCGAgcagguacucGACCGgg-UCg -3' miRNA: 3'- -CGCC-CCUCGACCAGCU----------CUGGUagaAG- -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 17798 | 0.74 | 0.568597 |
Target: 5'- cCGGGGAGCUGGUCGuAGAgUAUa--- -3' miRNA: 3'- cGCCCCUCGACCAGC-UCUgGUAgaag -5' |
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16092 | 5' | -56.3 | NC_004065.1 | + | 109338 | 1.12 | 0.002603 |
Target: 5'- cGCGGGGAGCUGGUCGAGACCAUCUUCa -3' miRNA: 3'- -CGCCCCUCGACCAGCUCUGGUAGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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