miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16092 5' -56.3 NC_004065.1 + 109338 1.12 0.002603
Target:  5'- cGCGGGGAGCUGGUCGAGACCAUCUUCa -3'
miRNA:   3'- -CGCCCCUCGACCAGCUCUGGUAGAAG- -5'
16092 5' -56.3 NC_004065.1 + 167599 0.66 0.957376
Target:  5'- uGUGGGu-GCUGG-CGGGGCUGUCg-- -3'
miRNA:   3'- -CGCCCcuCGACCaGCUCUGGUAGaag -5'
16092 5' -56.3 NC_004065.1 + 135725 0.66 0.953639
Target:  5'- gGCGGGGAuCUGGUgGAG-CUGUUg-- -3'
miRNA:   3'- -CGCCCCUcGACCAgCUCuGGUAGaag -5'
16092 5' -56.3 NC_004065.1 + 161025 0.66 0.949688
Target:  5'- gGCGGcaucgacgugcaGGGGCcGGUCGAcGCUAUCUaUCg -3'
miRNA:   3'- -CGCC------------CCUCGaCCAGCUcUGGUAGA-AG- -5'
16092 5' -56.3 NC_004065.1 + 62221 0.66 0.945519
Target:  5'- cCGGGGAGCgGGaaUCGGGAUaggaGUCg-- -3'
miRNA:   3'- cGCCCCUCGaCC--AGCUCUGg---UAGaag -5'
16092 5' -56.3 NC_004065.1 + 42837 0.66 0.936516
Target:  5'- uGCGGaGGGUcGGUCGAGACCccUCg-- -3'
miRNA:   3'- -CGCCcCUCGaCCAGCUCUGGu-AGaag -5'
16092 5' -56.3 NC_004065.1 + 179558 0.67 0.93168
Target:  5'- gGUGGGGAGCUGGgcUUGuGGAUUcaCUUCu -3'
miRNA:   3'- -CGCCCCUCGACC--AGC-UCUGGuaGAAG- -5'
16092 5' -56.3 NC_004065.1 + 173561 0.67 0.921333
Target:  5'- gGCGGGGAGgUcGGUCGAucaCGUCguUUCg -3'
miRNA:   3'- -CGCCCCUCgA-CCAGCUcugGUAG--AAG- -5'
16092 5' -56.3 NC_004065.1 + 91769 0.67 0.915822
Target:  5'- aCGGGGgcgaGGCUGGa-GAGAUCGUCgUCc -3'
miRNA:   3'- cGCCCC----UCGACCagCUCUGGUAGaAG- -5'
16092 5' -56.3 NC_004065.1 + 213890 0.67 0.910087
Target:  5'- cGCGGGGuuCUGGUCuGGGuCUAUCcuaUCg -3'
miRNA:   3'- -CGCCCCucGACCAG-CUCuGGUAGa--AG- -5'
16092 5' -56.3 NC_004065.1 + 56968 0.68 0.90413
Target:  5'- cGCGGGGAcGCUGGU-GAuguuCCGUCg-- -3'
miRNA:   3'- -CGCCCCU-CGACCAgCUcu--GGUAGaag -5'
16092 5' -56.3 NC_004065.1 + 77307 0.68 0.884949
Target:  5'- ---aGGAGC-GGaUCGuGACCAUCUUCg -3'
miRNA:   3'- cgccCCUCGaCC-AGCuCUGGUAGAAG- -5'
16092 5' -56.3 NC_004065.1 + 119529 0.71 0.772794
Target:  5'- cGCGGGGAcgUGGUCGAgGGCCAg---- -3'
miRNA:   3'- -CGCCCCUcgACCAGCU-CUGGUagaag -5'
16092 5' -56.3 NC_004065.1 + 131652 0.74 0.578406
Target:  5'- uGUGGcGGAGCUGGUCGAgcagguacucGACCGgg-UCg -3'
miRNA:   3'- -CGCC-CCUCGACCAGCU----------CUGGUagaAG- -5'
16092 5' -56.3 NC_004065.1 + 136306 0.71 0.745034
Target:  5'- cCGGGGAGCUGGUCcugGAGGuCCGg---- -3'
miRNA:   3'- cGCCCCUCGACCAG---CUCU-GGUagaag -5'
16092 5' -56.3 NC_004065.1 + 43631 0.71 0.735584
Target:  5'- aCGGGGuGCUGGUCGcuguagagGGACUGUCc-- -3'
miRNA:   3'- cGCCCCuCGACCAGC--------UCUGGUAGaag -5'
16092 5' -56.3 NC_004065.1 + 32857 0.71 0.734635
Target:  5'- cGCGGGGAGCuggcgucccUGGUCGAgaggcgcgccggcGAgCGUCUg- -3'
miRNA:   3'- -CGCCCCUCG---------ACCAGCU-------------CUgGUAGAag -5'
16092 5' -56.3 NC_004065.1 + 136410 0.73 0.627869
Target:  5'- cCGGGGAGCUGGUCcugGGGGCCc----- -3'
miRNA:   3'- cGCCCCUCGACCAG---CUCUGGuagaag -5'
16092 5' -56.3 NC_004065.1 + 136503 0.73 0.627869
Target:  5'- cCGGGGAGCUGGUCcGGGaaGCCAggCgggUCc -3'
miRNA:   3'- cGCCCCUCGACCAG-CUC--UGGUa-Ga--AG- -5'
16092 5' -56.3 NC_004065.1 + 127474 0.66 0.957376
Target:  5'- cCGGGGAGgUGGUCGggcgcggcgGGAgCGUUgUCc -3'
miRNA:   3'- cGCCCCUCgACCAGC---------UCUgGUAGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.