miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16095 3' -53.7 NC_004065.1 + 57960 0.66 0.989236
Target:  5'- aCAGCCCCCUUGgaGACcAUgaaacuggugaucuuGUGCUGa -3'
miRNA:   3'- aGUUGGGGGAGCagCUGaUG---------------UACGAC- -5'
16095 3' -53.7 NC_004065.1 + 128859 0.66 0.988689
Target:  5'- uUCGACCCguaccgaugCCUCGUCaGACauCGUGCg- -3'
miRNA:   3'- -AGUUGGG---------GGAGCAG-CUGauGUACGac -5'
16095 3' -53.7 NC_004065.1 + 140995 0.66 0.988689
Target:  5'- uUCGuCUCCaUCGcCGAgUACGUGCUGc -3'
miRNA:   3'- -AGUuGGGGgAGCaGCUgAUGUACGAC- -5'
16095 3' -53.7 NC_004065.1 + 91781 0.66 0.987226
Target:  5'- cCGACCCuCCUCGaCGGCgGCGaGCg- -3'
miRNA:   3'- aGUUGGG-GGAGCaGCUGaUGUaCGac -5'
16095 3' -53.7 NC_004065.1 + 5407 0.66 0.987226
Target:  5'- aCAACCCCgUgGagGGCcGCGUGCg- -3'
miRNA:   3'- aGUUGGGGgAgCagCUGaUGUACGac -5'
16095 3' -53.7 NC_004065.1 + 149193 0.66 0.985623
Target:  5'- cCGAUCCgCUCGcUCGgcGCUGC-UGCUGu -3'
miRNA:   3'- aGUUGGGgGAGC-AGC--UGAUGuACGAC- -5'
16095 3' -53.7 NC_004065.1 + 213050 0.66 0.985623
Target:  5'- -aGACCUCCUCGaaaCGGCcguCGUGCUa -3'
miRNA:   3'- agUUGGGGGAGCa--GCUGau-GUACGAc -5'
16095 3' -53.7 NC_004065.1 + 146380 0.66 0.98387
Target:  5'- cUCuACCCCgUCuUCGACUucuucgggcccaAUAUGCUGc -3'
miRNA:   3'- -AGuUGGGGgAGcAGCUGA------------UGUACGAC- -5'
16095 3' -53.7 NC_004065.1 + 147041 0.66 0.98387
Target:  5'- gCGACgCCC-CGUCGACUGCGa---- -3'
miRNA:   3'- aGUUGgGGGaGCAGCUGAUGUacgac -5'
16095 3' -53.7 NC_004065.1 + 155012 0.67 0.975207
Target:  5'- gUCGACgCCCUgGUCGACaACGccaGCUa -3'
miRNA:   3'- -AGUUGgGGGAgCAGCUGaUGUa--CGAc -5'
16095 3' -53.7 NC_004065.1 + 121072 0.67 0.975207
Target:  5'- gUCGugCCCCaggUCGUCGGCgUAC-UGCc- -3'
miRNA:   3'- -AGUugGGGG---AGCAGCUG-AUGuACGac -5'
16095 3' -53.7 NC_004065.1 + 186808 0.67 0.972592
Target:  5'- -gGACCCCCUCGUUG-UUAU-UGUUGu -3'
miRNA:   3'- agUUGGGGGAGCAGCuGAUGuACGAC- -5'
16095 3' -53.7 NC_004065.1 + 81190 0.67 0.966463
Target:  5'- gCGGCCgCCUCGUggccgagCGAggGCAUGUUGg -3'
miRNA:   3'- aGUUGGgGGAGCA-------GCUgaUGUACGAC- -5'
16095 3' -53.7 NC_004065.1 + 100625 0.68 0.952635
Target:  5'- gCAGCCCCaucagCGUCGGCgGCAgcgGCg- -3'
miRNA:   3'- aGUUGGGGga---GCAGCUGaUGUa--CGac -5'
16095 3' -53.7 NC_004065.1 + 64571 0.69 0.934924
Target:  5'- -gAGCCgCCgcggggagcgCGUCGACUggaACGUGCUGu -3'
miRNA:   3'- agUUGGgGGa---------GCAGCUGA---UGUACGAC- -5'
16095 3' -53.7 NC_004065.1 + 191117 0.69 0.929919
Target:  5'- -aAACCgCCCugaccgUCGUCGACcucCAUGCUGa -3'
miRNA:   3'- agUUGG-GGG------AGCAGCUGau-GUACGAC- -5'
16095 3' -53.7 NC_004065.1 + 116090 0.69 0.929919
Target:  5'- cCAGCCCCCgagcgccgcgUCGUCGAC-ACGcGCg- -3'
miRNA:   3'- aGUUGGGGG----------AGCAGCUGaUGUaCGac -5'
16095 3' -53.7 NC_004065.1 + 103810 0.7 0.919207
Target:  5'- --cGCCCgCCUCGUaCGGCaaguuCGUGCUGa -3'
miRNA:   3'- aguUGGG-GGAGCA-GCUGau---GUACGAC- -5'
16095 3' -53.7 NC_004065.1 + 136800 0.7 0.907565
Target:  5'- cCGGCCgCUUCGUCGGCUGCGUc--- -3'
miRNA:   3'- aGUUGGgGGAGCAGCUGAUGUAcgac -5'
16095 3' -53.7 NC_004065.1 + 129513 0.71 0.87449
Target:  5'- aUCGACCagCUCUgCGUCGACUACAcccUGCa- -3'
miRNA:   3'- -AGUUGG--GGGA-GCAGCUGAUGU---ACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.