miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16095 5' -59.9 NC_004065.1 + 120466 0.66 0.865103
Target:  5'- aGGCGGCCaCCUCGaggucgcuGACGAcGGUGUCGu -3'
miRNA:   3'- -CUGCCGGcGGGGC--------CUGUUcCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 106091 0.66 0.865103
Target:  5'- cGACGGUCGga-CGuucACGAGGAUGUCGg -3'
miRNA:   3'- -CUGCCGGCgggGCc--UGUUCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 116094 0.66 0.865103
Target:  5'- -uCGGCCGagcucaUCCGG-CGAGGGgugGUCGc -3'
miRNA:   3'- cuGCCGGCg-----GGGCCuGUUCCUa--CAGC- -5'
16095 5' -59.9 NC_004065.1 + 24215 0.66 0.860817
Target:  5'- cGCGGUuggcgagguuucgcuCGCgCCaGGAC-AGGAUGUCGu -3'
miRNA:   3'- cUGCCG---------------GCGgGG-CCUGuUCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 29584 0.66 0.857922
Target:  5'- uGACGGCgGCCgCGGugAccGcgGUCc -3'
miRNA:   3'- -CUGCCGgCGGgGCCugUucCuaCAGc -5'
16095 5' -59.9 NC_004065.1 + 32931 0.66 0.857194
Target:  5'- aGACGGCCGgucggcuCCCgcgCGGAUgcGGgcGUCGa -3'
miRNA:   3'- -CUGCCGGC-------GGG---GCCUGuuCCuaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 186650 0.66 0.855732
Target:  5'- --gGGCCGCCgauacgucgucgacUCGGACGAG--UGUCGg -3'
miRNA:   3'- cugCCGGCGG--------------GGCCUGUUCcuACAGC- -5'
16095 5' -59.9 NC_004065.1 + 32319 0.66 0.85056
Target:  5'- cGGCGGCCGCgaCGG-CGucGGAcGUCGa -3'
miRNA:   3'- -CUGCCGGCGggGCCuGUu-CCUaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 139885 0.66 0.85056
Target:  5'- uGACGGUgGUCCgGGugA-GGGUGaUCGc -3'
miRNA:   3'- -CUGCCGgCGGGgCCugUuCCUAC-AGC- -5'
16095 5' -59.9 NC_004065.1 + 128731 0.66 0.843021
Target:  5'- aGGCGGCUgGCCCCGaGGCAGcc--GUCGg -3'
miRNA:   3'- -CUGCCGG-CGGGGC-CUGUUccuaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 110139 0.66 0.841493
Target:  5'- -cCGGCCGCgCCGGcaaguucucgcuCAGGGAcGUCu -3'
miRNA:   3'- cuGCCGGCGgGGCCu-----------GUUCCUaCAGc -5'
16095 5' -59.9 NC_004065.1 + 25737 0.66 0.835312
Target:  5'- aACGGCCGaagacgucgaCgaGGACcAGGGUGUCGu -3'
miRNA:   3'- cUGCCGGCg---------GggCCUGuUCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 17964 0.66 0.835312
Target:  5'- gGACGGUCGUCCgucugccgCGcGACcucuuGGGUGUCGg -3'
miRNA:   3'- -CUGCCGGCGGG--------GC-CUGuu---CCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 101895 0.66 0.834532
Target:  5'- gGGCGGCUccuccgaGCUgCUGGAgGAGGAUGcUCGa -3'
miRNA:   3'- -CUGCCGG-------CGG-GGCCUgUUCCUAC-AGC- -5'
16095 5' -59.9 NC_004065.1 + 39770 0.66 0.830608
Target:  5'- aGCGGCuCGgUCCGGGgAAGGAUugugcucagauccgaGUCGg -3'
miRNA:   3'- cUGCCG-GCgGGGCCUgUUCCUA---------------CAGC- -5'
16095 5' -59.9 NC_004065.1 + 31633 0.66 0.827439
Target:  5'- uGCGGCUGacgaCgCCGGGCuacGGGAcGUCGg -3'
miRNA:   3'- cUGCCGGCg---G-GGCCUGu--UCCUaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 176484 0.66 0.827439
Target:  5'- aGGCGGagGCaCCgGGACGGuGGGUGUCc -3'
miRNA:   3'- -CUGCCggCG-GGgCCUGUU-CCUACAGc -5'
16095 5' -59.9 NC_004065.1 + 33132 0.66 0.827439
Target:  5'- -cUGGUgGCCCCGGACcuGGAUa--- -3'
miRNA:   3'- cuGCCGgCGGGGCCUGuuCCUAcagc -5'
16095 5' -59.9 NC_004065.1 + 211145 0.66 0.827439
Target:  5'- -cUGGCCGUUCgggggggagCGGGCGugccGGGAUGUCGc -3'
miRNA:   3'- cuGCCGGCGGG---------GCCUGU----UCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 223096 0.66 0.827439
Target:  5'- --gGGCCGUCuuGGugGAGGuuuagGUCc -3'
miRNA:   3'- cugCCGGCGGggCCugUUCCua---CAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.