miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16095 5' -59.9 NC_004065.1 + 127223 0.67 0.819408
Target:  5'- cGGCGGCCGCgaggaUCGGGCGcgguggcgGGGAUGa-- -3'
miRNA:   3'- -CUGCCGGCGg----GGCCUGU--------UCCUACagc -5'
16095 5' -59.9 NC_004065.1 + 98856 0.67 0.819408
Target:  5'- cGugGGUgCGCUgCCGGaACGGGGGUcGUCGu -3'
miRNA:   3'- -CugCCG-GCGG-GGCC-UGUUCCUA-CAGC- -5'
16095 5' -59.9 NC_004065.1 + 225071 0.67 0.819408
Target:  5'- uGGCGGCCGCUCCaGGAgAAcuGGAUcaCGu -3'
miRNA:   3'- -CUGCCGGCGGGG-CCUgUU--CCUAcaGC- -5'
16095 5' -59.9 NC_004065.1 + 130935 0.67 0.819408
Target:  5'- uACGGCCGCgCCCGaGACuucucGUGUCu -3'
miRNA:   3'- cUGCCGGCG-GGGC-CUGuucc-UACAGc -5'
16095 5' -59.9 NC_004065.1 + 48681 0.67 0.811225
Target:  5'- --aGGCCGUCCUGGAagAAGGAcacuagacUGUCc -3'
miRNA:   3'- cugCCGGCGGGGCCUg-UUCCU--------ACAGc -5'
16095 5' -59.9 NC_004065.1 + 174919 0.67 0.800373
Target:  5'- cGGC-GCCGCCgCGGGCGccAGGAuuauuauuuaacgcUGUCGc -3'
miRNA:   3'- -CUGcCGGCGGgGCCUGU--UCCU--------------ACAGC- -5'
16095 5' -59.9 NC_004065.1 + 119588 0.67 0.78584
Target:  5'- aACGGCUGgCCUGGACGugcAGGAcGcCGg -3'
miRNA:   3'- cUGCCGGCgGGGCCUGU---UCCUaCaGC- -5'
16095 5' -59.9 NC_004065.1 + 86847 0.67 0.78584
Target:  5'- cGGgGGCCGCUCggCGGACA-GGAUGa-- -3'
miRNA:   3'- -CUgCCGGCGGG--GCCUGUuCCUACagc -5'
16095 5' -59.9 NC_004065.1 + 191175 0.67 0.78584
Target:  5'- cGAUGGgCGUCCCGcGGCAGauguggaggcuGGggGUCGg -3'
miRNA:   3'- -CUGCCgGCGGGGC-CUGUU-----------CCuaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 145689 0.67 0.78584
Target:  5'- cGACGaCCGCCgcuaaCGGGCGGGGGUaggaggagagGUCGg -3'
miRNA:   3'- -CUGCcGGCGGg----GCCUGUUCCUA----------CAGC- -5'
16095 5' -59.9 NC_004065.1 + 33878 0.67 0.78584
Target:  5'- aGAUGGCggaGUCCCaGGCGAGGGUGa-- -3'
miRNA:   3'- -CUGCCGg--CGGGGcCUGUUCCUACagc -5'
16095 5' -59.9 NC_004065.1 + 223977 0.67 0.783237
Target:  5'- gGAUGGCCGUCCCgcucguguaggGGACAucaacagccacgucAGGAgcaggGUCa -3'
miRNA:   3'- -CUGCCGGCGGGG-----------CCUGU--------------UCCUa----CAGc -5'
16095 5' -59.9 NC_004065.1 + 104314 0.67 0.777123
Target:  5'- aGGCGGgcCCGCCCCaGG--GGGAUGaUCGg -3'
miRNA:   3'- -CUGCC--GGCGGGGcCUguUCCUAC-AGC- -5'
16095 5' -59.9 NC_004065.1 + 189767 0.67 0.777123
Target:  5'- cGGCgGGgCGCCCCaGAaaccccggGGGGAUGUCGu -3'
miRNA:   3'- -CUG-CCgGCGGGGcCUg-------UUCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 22032 0.67 0.777123
Target:  5'- -cCGGCCacgGCCCCGGGCAGGccgcGGUaucccuccgGUCGg -3'
miRNA:   3'- cuGCCGG---CGGGGCCUGUUC----CUA---------CAGC- -5'
16095 5' -59.9 NC_004065.1 + 126880 0.68 0.771836
Target:  5'- uGGCGGUgcuacgcgugcugaaCGCCUCGGACGAGcacGUCGa -3'
miRNA:   3'- -CUGCCG---------------GCGGGGCCUGUUCcuaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 18133 0.68 0.759349
Target:  5'- --gGGcCCGCCgCgGGACG-GGAUGUUGg -3'
miRNA:   3'- cugCC-GGCGG-GgCCUGUuCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 57618 0.68 0.750309
Target:  5'- --aGGCUGCCgaGGcACAAGGA-GUCGa -3'
miRNA:   3'- cugCCGGCGGggCC-UGUUCCUaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 148850 0.68 0.741176
Target:  5'- aGGCGGCCGCCgCGauCGAGGAgg-CGg -3'
miRNA:   3'- -CUGCCGGCGGgGCcuGUUCCUacaGC- -5'
16095 5' -59.9 NC_004065.1 + 60586 0.68 0.741176
Target:  5'- cGCGGaaggCGCCCCGGACGAaGAguUCGg -3'
miRNA:   3'- cUGCCg---GCGGGGCCUGUUcCUacAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.