miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16095 5' -59.9 NC_004065.1 + 17964 0.66 0.835312
Target:  5'- gGACGGUCGUCCgucugccgCGcGACcucuuGGGUGUCGg -3'
miRNA:   3'- -CUGCCGGCGGG--------GC-CUGuu---CCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 18133 0.68 0.759349
Target:  5'- --gGGcCCGCCgCgGGACG-GGAUGUUGg -3'
miRNA:   3'- cugCC-GGCGG-GgCCUGUuCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 22032 0.67 0.777123
Target:  5'- -cCGGCCacgGCCCCGGGCAGGccgcGGUaucccuccgGUCGg -3'
miRNA:   3'- cuGCCGG---CGGGGCCUGUUC----CUA---------CAGC- -5'
16095 5' -59.9 NC_004065.1 + 24215 0.66 0.860817
Target:  5'- cGCGGUuggcgagguuucgcuCGCgCCaGGAC-AGGAUGUCGu -3'
miRNA:   3'- cUGCCG---------------GCGgGG-CCUGuUCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 25737 0.66 0.835312
Target:  5'- aACGGCCGaagacgucgaCgaGGACcAGGGUGUCGu -3'
miRNA:   3'- cUGCCGGCg---------GggCCUGuUCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 29584 0.66 0.857922
Target:  5'- uGACGGCgGCCgCGGugAccGcgGUCc -3'
miRNA:   3'- -CUGCCGgCGGgGCCugUucCuaCAGc -5'
16095 5' -59.9 NC_004065.1 + 31086 0.69 0.703875
Target:  5'- uGGCGGCgGCCuuGGcCGccAGGGUGgagCGg -3'
miRNA:   3'- -CUGCCGgCGGggCCuGU--UCCUACa--GC- -5'
16095 5' -59.9 NC_004065.1 + 31271 0.72 0.51333
Target:  5'- uGCGGUCGCCaCGGACGgagaggAGGAcGUCGg -3'
miRNA:   3'- cUGCCGGCGGgGCCUGU------UCCUaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 31633 0.66 0.827439
Target:  5'- uGCGGCUGacgaCgCCGGGCuacGGGAcGUCGg -3'
miRNA:   3'- cUGCCGGCg---G-GGCCUGu--UCCUaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 32319 0.66 0.85056
Target:  5'- cGGCGGCCGCgaCGG-CGucGGAcGUCGa -3'
miRNA:   3'- -CUGCCGGCGggGCCuGUu-CCUaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 32931 0.66 0.857194
Target:  5'- aGACGGCCGgucggcuCCCgcgCGGAUgcGGgcGUCGa -3'
miRNA:   3'- -CUGCCGGC-------GGG---GCCUGuuCCuaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 33132 0.66 0.827439
Target:  5'- -cUGGUgGCCCCGGACcuGGAUa--- -3'
miRNA:   3'- cuGCCGgCGGGGCCUGuuCCUAcagc -5'
16095 5' -59.9 NC_004065.1 + 33137 0.69 0.694396
Target:  5'- cGACGGCCGUgaaGGGCAggGGGAUGcCGu -3'
miRNA:   3'- -CUGCCGGCGgggCCUGU--UCCUACaGC- -5'
16095 5' -59.9 NC_004065.1 + 33878 0.67 0.78584
Target:  5'- aGAUGGCggaGUCCCaGGCGAGGGUGa-- -3'
miRNA:   3'- -CUGCCGg--CGGGGcCUGUUCCUACagc -5'
16095 5' -59.9 NC_004065.1 + 35623 0.7 0.607876
Target:  5'- cGGCGGCgGCggCGG-CGGGGAUGUCa -3'
miRNA:   3'- -CUGCCGgCGggGCCuGUUCCUACAGc -5'
16095 5' -59.9 NC_004065.1 + 37531 0.68 0.741176
Target:  5'- cGCGGCUGUCCgaGGGCAAGaucucGGUGUCc -3'
miRNA:   3'- cUGCCGGCGGGg-CCUGUUC-----CUACAGc -5'
16095 5' -59.9 NC_004065.1 + 38204 0.7 0.627159
Target:  5'- cGACGGCacugauaGCCCCGGGgGgguGGGAucccuccggcuUGUCGu -3'
miRNA:   3'- -CUGCCGg------CGGGGCCUgU---UCCU-----------ACAGC- -5'
16095 5' -59.9 NC_004065.1 + 39770 0.66 0.830608
Target:  5'- aGCGGCuCGgUCCGGGgAAGGAUugugcucagauccgaGUCGg -3'
miRNA:   3'- cUGCCG-GCgGGGCCUgUUCCUA---------------CAGC- -5'
16095 5' -59.9 NC_004065.1 + 48681 0.67 0.811225
Target:  5'- --aGGCCGUCCUGGAagAAGGAcacuagacUGUCc -3'
miRNA:   3'- cugCCGGCGGGGCCUg-UUCCU--------ACAGc -5'
16095 5' -59.9 NC_004065.1 + 55580 0.71 0.560053
Target:  5'- aGACGGucCCGCCgUCGGACAcgAGGAUGggcgCGu -3'
miRNA:   3'- -CUGCC--GGCGG-GGCCUGU--UCCUACa---GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.