miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16095 5' -59.9 NC_004065.1 + 223977 0.67 0.783237
Target:  5'- gGAUGGCCGUCCCgcucguguaggGGACAucaacagccacgucAGGAgcaggGUCa -3'
miRNA:   3'- -CUGCCGGCGGGG-----------CCUGU--------------UCCUa----CAGc -5'
16095 5' -59.9 NC_004065.1 + 71440 0.69 0.694396
Target:  5'- gGugGGUgGCCCCGG-CGAGGAc---- -3'
miRNA:   3'- -CugCCGgCGGGGCCuGUUCCUacagc -5'
16095 5' -59.9 NC_004065.1 + 68957 0.69 0.694396
Target:  5'- aGACGGCgCGCaagcagauCUCGGACGAGGAgaugCGg -3'
miRNA:   3'- -CUGCCG-GCG--------GGGCCUGUUCCUaca-GC- -5'
16095 5' -59.9 NC_004065.1 + 56107 0.69 0.703875
Target:  5'- aGACGuGaCCGUCCCGGACGAcGGcgG-CGc -3'
miRNA:   3'- -CUGC-C-GGCGGGGCCUGUU-CCuaCaGC- -5'
16095 5' -59.9 NC_004065.1 + 154139 0.69 0.703875
Target:  5'- gGACGaUCGCCCCGGGCGGuGGcgG-CGg -3'
miRNA:   3'- -CUGCcGGCGGGGCCUGUU-CCuaCaGC- -5'
16095 5' -59.9 NC_004065.1 + 31086 0.69 0.703875
Target:  5'- uGGCGGCgGCCuuGGcCGccAGGGUGgagCGg -3'
miRNA:   3'- -CUGCCGgCGGggCCuGU--UCCUACa--GC- -5'
16095 5' -59.9 NC_004065.1 + 18133 0.68 0.759349
Target:  5'- --gGGcCCGCCgCgGGACG-GGAUGUUGg -3'
miRNA:   3'- cugCC-GGCGG-GgCCUGUuCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 22032 0.67 0.777123
Target:  5'- -cCGGCCacgGCCCCGGGCAGGccgcGGUaucccuccgGUCGg -3'
miRNA:   3'- cuGCCGG---CGGGGCCUGUUC----CUA---------CAGC- -5'
16095 5' -59.9 NC_004065.1 + 189767 0.67 0.777123
Target:  5'- cGGCgGGgCGCCCCaGAaaccccggGGGGAUGUCGu -3'
miRNA:   3'- -CUG-CCgGCGGGGcCUg-------UUCCUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 33137 0.69 0.694396
Target:  5'- cGACGGCCGUgaaGGGCAggGGGAUGcCGu -3'
miRNA:   3'- -CUGCCGGCGgggCCUGU--UCCUACaGC- -5'
16095 5' -59.9 NC_004065.1 + 69347 0.69 0.684871
Target:  5'- uGGCGGagggcaacCUGCCCuCGGACGAcauGAUGUCGa -3'
miRNA:   3'- -CUGCC--------GGCGGG-GCCUGUUc--CUACAGC- -5'
16095 5' -59.9 NC_004065.1 + 35623 0.7 0.607876
Target:  5'- cGGCGGCgGCggCGG-CGGGGAUGUCa -3'
miRNA:   3'- -CUGCCGgCGggGCCuGUUCCUACAGc -5'
16095 5' -59.9 NC_004065.1 + 81188 0.75 0.384859
Target:  5'- cGGCGGCCGCCUCGuGGCcgagcGAGGGcaUGUUGg -3'
miRNA:   3'- -CUGCCGGCGGGGC-CUG-----UUCCU--ACAGC- -5'
16095 5' -59.9 NC_004065.1 + 77990 0.74 0.40075
Target:  5'- cGGCGaGCCGCCCCGGGacgGAGGAgccguUCGa -3'
miRNA:   3'- -CUGC-CGGCGGGGCCUg--UUCCUac---AGC- -5'
16095 5' -59.9 NC_004065.1 + 213220 0.73 0.48607
Target:  5'- cGACGGCgGCCgUGGACGAuGGuucgGUCGu -3'
miRNA:   3'- -CUGCCGgCGGgGCCUGUU-CCua--CAGC- -5'
16095 5' -59.9 NC_004065.1 + 31271 0.72 0.51333
Target:  5'- uGCGGUCGCCaCGGACGgagaggAGGAcGUCGg -3'
miRNA:   3'- cUGCCGGCGGgGCCUGU------UCCUaCAGC- -5'
16095 5' -59.9 NC_004065.1 + 150921 0.72 0.522557
Target:  5'- cGACGGCgGCUCCGG-CG-GGuUGUCGa -3'
miRNA:   3'- -CUGCCGgCGGGGCCuGUuCCuACAGC- -5'
16095 5' -59.9 NC_004065.1 + 55580 0.71 0.560053
Target:  5'- aGACGGucCCGCCgUCGGACAcgAGGAUGggcgCGu -3'
miRNA:   3'- -CUGCC--GGCGG-GGCCUGU--UCCUACa---GC- -5'
16095 5' -59.9 NC_004065.1 + 162481 0.71 0.56955
Target:  5'- cGCGGCCGgCCaGGACGAGGAgcgccacuagGUUGa -3'
miRNA:   3'- cUGCCGGCgGGgCCUGUUCCUa---------CAGC- -5'
16095 5' -59.9 NC_004065.1 + 186714 0.71 0.579087
Target:  5'- aACGGuuGCCCCGG-CAugcugaaggacAGGGUGUUc -3'
miRNA:   3'- cUGCCggCGGGGCCuGU-----------UCCUACAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.