miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16096 3' -53.6 NC_004065.1 + 199555 0.66 0.989217
Target:  5'- cGGGCGCGCcccaUCGUGCcgcGGUCCa -3'
miRNA:   3'- cCUCGCGUGucagAGUAUGa--CCAGGa -5'
16096 3' -53.6 NC_004065.1 + 149921 0.66 0.989217
Target:  5'- aGGGGCGCGCGG-CUCGgcaggagGCgGGcuugaUCCa -3'
miRNA:   3'- -CCUCGCGUGUCaGAGUa------UGaCC-----AGGa -5'
16096 3' -53.6 NC_004065.1 + 195049 0.66 0.987803
Target:  5'- aGGGCGCACGgcGUCUCucugaaGUGCaGGUCg- -3'
miRNA:   3'- cCUCGCGUGU--CAGAG------UAUGaCCAGga -5'
16096 3' -53.6 NC_004065.1 + 140159 0.66 0.982694
Target:  5'- gGGAGCaCGCAGUCcuUCAacCUGGaCCUc -3'
miRNA:   3'- -CCUCGcGUGUCAG--AGUauGACCaGGA- -5'
16096 3' -53.6 NC_004065.1 + 108731 0.66 0.982694
Target:  5'- gGGGGCGCGCGucgccCUCAcGCgGGUCUUc -3'
miRNA:   3'- -CCUCGCGUGUca---GAGUaUGaCCAGGA- -5'
16096 3' -53.6 NC_004065.1 + 165856 0.67 0.978485
Target:  5'- cGGGGcCGgACGGUCUCucAC-GGUCCc -3'
miRNA:   3'- -CCUC-GCgUGUCAGAGuaUGaCCAGGa -5'
16096 3' -53.6 NC_004065.1 + 44979 0.67 0.976117
Target:  5'- aGGAGUGUcucuugGCAGUCUCGgacACUGGg--- -3'
miRNA:   3'- -CCUCGCG------UGUCAGAGUa--UGACCagga -5'
16096 3' -53.6 NC_004065.1 + 166662 0.68 0.964724
Target:  5'- -cAGCGCAgCAGaaCUCGgaGCUGGUCCg -3'
miRNA:   3'- ccUCGCGU-GUCa-GAGUa-UGACCAGGa -5'
16096 3' -53.6 NC_004065.1 + 15475 0.69 0.941253
Target:  5'- aGAGUGCACccGGUCUCGUAUgcacGGUgCg -3'
miRNA:   3'- cCUCGCGUG--UCAGAGUAUGa---CCAgGa -5'
16096 3' -53.6 NC_004065.1 + 59857 0.71 0.876666
Target:  5'- cGGAGCGCACGcaCUCAUcgagcACUGaUCCUu -3'
miRNA:   3'- -CCUCGCGUGUcaGAGUA-----UGACcAGGA- -5'
16096 3' -53.6 NC_004065.1 + 23769 0.76 0.613677
Target:  5'- uGGAGCGCAuCAGUCuguugacugccuuucUCAUGCUGuUCCUc -3'
miRNA:   3'- -CCUCGCGU-GUCAG---------------AGUAUGACcAGGA- -5'
16096 3' -53.6 NC_004065.1 + 195453 0.77 0.579353
Target:  5'- cGGAGCGCACGGUCUgCGUcggACaGGUCg- -3'
miRNA:   3'- -CCUCGCGUGUCAGA-GUA---UGaCCAGga -5'
16096 3' -53.6 NC_004065.1 + 110795 1.1 0.006373
Target:  5'- cGGAGCGCACAGUCUCAUACUGGUCCUu -3'
miRNA:   3'- -CCUCGCGUGUCAGAGUAUGACCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.