miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16096 5' -64.6 NC_004065.1 + 120415 0.66 0.671098
Target:  5'- -uGGGCACCGcGgccCGGGGgucgaGCGcGGCCu -3'
miRNA:   3'- ggUCCGUGGU-Cac-GCCCCg----CGC-CCGG- -5'
16096 5' -64.6 NC_004065.1 + 168625 0.66 0.661779
Target:  5'- gCuGGCGCUGGUGCcGcGG-GCGGaGCCg -3'
miRNA:   3'- gGuCCGUGGUCACGcC-CCgCGCC-CGG- -5'
16096 5' -64.6 NC_004065.1 + 108314 0.66 0.661779
Target:  5'- aCCuGaCGCCcgcaagcGUGCGGGGCGaCGGGg- -3'
miRNA:   3'- -GGuCcGUGGu------CACGCCCCGC-GCCCgg -5'
16096 5' -64.6 NC_004065.1 + 229656 0.66 0.652441
Target:  5'- gCC-GGCGgCAGUGgcaggugggcguCGGGGCGCGcGUCc -3'
miRNA:   3'- -GGuCCGUgGUCAC------------GCCCCGCGCcCGG- -5'
16096 5' -64.6 NC_004065.1 + 30008 0.66 0.652441
Target:  5'- -gAGGCugcgcgaccgucACCGGcGCGGuGGUGaCGGGCa -3'
miRNA:   3'- ggUCCG------------UGGUCaCGCC-CCGC-GCCCGg -5'
16096 5' -64.6 NC_004065.1 + 4395 0.66 0.643089
Target:  5'- gCCGGaGUGCUguucGGaGCGGuGGCcacgGCGGGCCu -3'
miRNA:   3'- -GGUC-CGUGG----UCaCGCC-CCG----CGCCCGG- -5'
16096 5' -64.6 NC_004065.1 + 41492 0.66 0.643089
Target:  5'- cCgGGGCGUCGG-GaCGGGgagcGCGCGGGCg -3'
miRNA:   3'- -GgUCCGUGGUCaC-GCCC----CGCGCCCGg -5'
16096 5' -64.6 NC_004065.1 + 48107 0.66 0.633729
Target:  5'- --cGGCGgCGGUgGCGGcGGCGgUGGGaCCu -3'
miRNA:   3'- gguCCGUgGUCA-CGCC-CCGC-GCCC-GG- -5'
16096 5' -64.6 NC_004065.1 + 23549 0.66 0.633729
Target:  5'- aCCGGGagaAgaAGaUGCGGGcGgGCGGGCa -3'
miRNA:   3'- -GGUCCg--UggUC-ACGCCC-CgCGCCCGg -5'
16096 5' -64.6 NC_004065.1 + 168557 0.66 0.633729
Target:  5'- --uGGCAgCGGcgGCGGcGGCgacaGCGGGCg -3'
miRNA:   3'- gguCCGUgGUCa-CGCC-CCG----CGCCCGg -5'
16096 5' -64.6 NC_004065.1 + 154334 0.66 0.633729
Target:  5'- gCAGGa---GGUG-GGGGCGC-GGCCa -3'
miRNA:   3'- gGUCCguggUCACgCCCCGCGcCCGG- -5'
16096 5' -64.6 NC_004065.1 + 18142 0.66 0.632793
Target:  5'- cCCAGGUcccuuugaaauACCAuaugaccGUGUGGaGCGCcGGCCg -3'
miRNA:   3'- -GGUCCG-----------UGGU-------CACGCCcCGCGcCCGG- -5'
16096 5' -64.6 NC_004065.1 + 104286 0.66 0.624369
Target:  5'- gCCGGGC-CCuGUcUGGaGGCguucgcgcagGCGGGCCc -3'
miRNA:   3'- -GGUCCGuGGuCAcGCC-CCG----------CGCCCGG- -5'
16096 5' -64.6 NC_004065.1 + 154149 0.66 0.624369
Target:  5'- cCCGGGCGgUGGcgGCGGcGGCgGCGgcGGCUg -3'
miRNA:   3'- -GGUCCGUgGUCa-CGCC-CCG-CGC--CCGG- -5'
16096 5' -64.6 NC_004065.1 + 139845 0.66 0.624369
Target:  5'- cCCGGGaGgCGGgcgacgGCGGaGGCGgCGGaGCCg -3'
miRNA:   3'- -GGUCCgUgGUCa-----CGCC-CCGC-GCC-CGG- -5'
16096 5' -64.6 NC_004065.1 + 29410 0.66 0.624369
Target:  5'- gUAGGCGCCGGUGgGccaGGGCagggagaaGaCGGuGCCg -3'
miRNA:   3'- gGUCCGUGGUCACgC---CCCG--------C-GCC-CGG- -5'
16096 5' -64.6 NC_004065.1 + 92511 0.67 0.618755
Target:  5'- gCCuuuuGGC-CCGGUGCcucgcgcgcgcguacGGGcGgGCGGGCg -3'
miRNA:   3'- -GGu---CCGuGGUCACG---------------CCC-CgCGCCCGg -5'
16096 5' -64.6 NC_004065.1 + 83588 0.67 0.615014
Target:  5'- gCGGGgaaGCCGGggaagaaGaCGGaGCGCGGGCCc -3'
miRNA:   3'- gGUCCg--UGGUCa------C-GCCcCGCGCCCGG- -5'
16096 5' -64.6 NC_004065.1 + 196824 0.67 0.615014
Target:  5'- uCguGGuCACC--UGCGGcaGGUGCGGGCg -3'
miRNA:   3'- -GguCC-GUGGucACGCC--CCGCGCCCGg -5'
16096 5' -64.6 NC_004065.1 + 109754 0.67 0.612209
Target:  5'- gCCGGGCuugcguuucuacgcGCCGGUcaGCaGGGCaggcgcuacgccGCGGGCa -3'
miRNA:   3'- -GGUCCG--------------UGGUCA--CGcCCCG------------CGCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.