miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 130642 0.66 0.807727
Target:  5'- cCGCCaGGC-AGC-CCACGC--CCGUCa -3'
miRNA:   3'- -GCGG-CCGcUCGaGGUGCGcaGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 120332 0.66 0.807727
Target:  5'- uCGCCGcGCGAuCUCgGCGgCGaugUCGUCGg -3'
miRNA:   3'- -GCGGC-CGCUcGAGgUGC-GCa--GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 205540 0.66 0.807727
Target:  5'- gGCCGGCGGcgguGCcaUCUACGCGcCCauGUCc -3'
miRNA:   3'- gCGGCCGCU----CG--AGGUGCGCaGG--CAGc -5'
16097 5' -61.9 NC_004065.1 + 100521 0.66 0.807727
Target:  5'- gCGCCGGCaca---CGCGCGUCuCGUCu -3'
miRNA:   3'- -GCGGCCGcucgagGUGCGCAG-GCAGc -5'
16097 5' -61.9 NC_004065.1 + 18178 0.66 0.799518
Target:  5'- gCGCCGGcCGGGaCUCC-CGUgcgauagccuuGUCCG-CGg -3'
miRNA:   3'- -GCGGCC-GCUC-GAGGuGCG-----------CAGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 114009 0.66 0.799518
Target:  5'- cCGUCGGCagaGAGCUgcCCcCGCGgcgCaCGUCGg -3'
miRNA:   3'- -GCGGCCG---CUCGA--GGuGCGCa--G-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 146031 0.66 0.799518
Target:  5'- aGCUGGCGGGCgacgucaUCGCGaUGUCCGa-- -3'
miRNA:   3'- gCGGCCGCUCGa------GGUGC-GCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 162657 0.66 0.799518
Target:  5'- aGCCuaGGCGuGuCUagacucgaCCGCGCGUCCGgagCGc -3'
miRNA:   3'- gCGG--CCGCuC-GA--------GGUGCGCAGGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 146422 0.66 0.799518
Target:  5'- -uCCGG-GGGC-CCGCGC-UCCGUCu -3'
miRNA:   3'- gcGGCCgCUCGaGGUGCGcAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 99968 0.66 0.799518
Target:  5'- cCGCCgcGGCGuGCUCgGgcCGCGggUCGUCGu -3'
miRNA:   3'- -GCGG--CCGCuCGAGgU--GCGCa-GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 207538 0.66 0.791179
Target:  5'- uCGCC-GCGcGCUCCGCGuCGUCgCGcCu -3'
miRNA:   3'- -GCGGcCGCuCGAGGUGC-GCAG-GCaGc -5'
16097 5' -61.9 NC_004065.1 + 78179 0.66 0.791179
Target:  5'- aGCUGGCcaucuGCUCgacgaACGCGUacCCGUCGc -3'
miRNA:   3'- gCGGCCGcu---CGAGg----UGCGCA--GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 136574 0.66 0.791179
Target:  5'- aGCCGGgGAGCUggucCUGCG-GUCCGg-- -3'
miRNA:   3'- gCGGCCgCUCGA----GGUGCgCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 166151 0.66 0.791179
Target:  5'- gCGCCGGCG-GCagCgGCGCcgaCGUCGu -3'
miRNA:   3'- -GCGGCCGCuCGa-GgUGCGcagGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 67578 0.66 0.790339
Target:  5'- uCGCCGaaGCGcaggggccucGGCUCgagauagCGCgGCGUCCGUCGc -3'
miRNA:   3'- -GCGGC--CGC----------UCGAG-------GUG-CGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 170125 0.66 0.786117
Target:  5'- uGCCGGgaucggguaucgagaUGGGCUCUggaaACGCGUCgggGUCGg -3'
miRNA:   3'- gCGGCC---------------GCUCGAGG----UGCGCAGg--CAGC- -5'
16097 5' -61.9 NC_004065.1 + 75123 0.66 0.782718
Target:  5'- -uCCGGCG-GCUucgaUCGCGCGaUCGUCGa -3'
miRNA:   3'- gcGGCCGCuCGA----GGUGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 120553 0.66 0.782718
Target:  5'- uGCCGGCGGcGgUCgGCGCGagCGggCGg -3'
miRNA:   3'- gCGGCCGCU-CgAGgUGCGCagGCa-GC- -5'
16097 5' -61.9 NC_004065.1 + 194965 0.66 0.774143
Target:  5'- aGCUGGuCGAuGUUCCuggcCGCGUaguacagcCCGUCGg -3'
miRNA:   3'- gCGGCC-GCU-CGAGGu---GCGCA--------GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 26022 0.66 0.774143
Target:  5'- gGCCucGGCGucguccaccagcGGCUCgCACGCGg-CGUCGa -3'
miRNA:   3'- gCGG--CCGC------------UCGAG-GUGCGCagGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.