Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16097 | 5' | -61.9 | NC_004065.1 | + | 194965 | 0.66 | 0.774143 |
Target: 5'- aGCUGGuCGAuGUUCCuggcCGCGUaguacagcCCGUCGg -3' miRNA: 3'- gCGGCC-GCU-CGAGGu---GCGCA--------GGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 75123 | 0.66 | 0.782718 |
Target: 5'- -uCCGGCG-GCUucgaUCGCGCGaUCGUCGa -3' miRNA: 3'- gcGGCCGCuCGA----GGUGCGCaGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 102429 | 0.66 | 0.762833 |
Target: 5'- aGCCGGCGc-CUCCccucugcgaccugaACgGCGUgCCGUCGu -3' miRNA: 3'- gCGGCCGCucGAGG--------------UG-CGCA-GGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 200752 | 0.66 | 0.765459 |
Target: 5'- aCGa-GGCG-GCU-CACGCGUCgGUCGc -3' miRNA: 3'- -GCggCCGCuCGAgGUGCGCAGgCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 90956 | 0.66 | 0.765459 |
Target: 5'- aCGgCGGUGAGCUUCugGCuGguguagCCGUgGu -3' miRNA: 3'- -GCgGCCGCUCGAGGugCG-Ca-----GGCAgC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 167699 | 0.66 | 0.765459 |
Target: 5'- uCGCCGucucCGAGCUCUGCuGCaguucucugGUCUGUCGa -3' miRNA: 3'- -GCGGCc---GCUCGAGGUG-CG---------CAGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 165881 | 0.66 | 0.765459 |
Target: 5'- cCGaaGGCGAgGC-CgCACGCGcugCCGUCGu -3' miRNA: 3'- -GCggCCGCU-CGaG-GUGCGCa--GGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 26022 | 0.66 | 0.774143 |
Target: 5'- gGCCucGGCGucguccaccagcGGCUCgCACGCGg-CGUCGa -3' miRNA: 3'- gCGG--CCGC------------UCGAG-GUGCGCagGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 120553 | 0.66 | 0.782718 |
Target: 5'- uGCCGGCGGcGgUCgGCGCGagCGggCGg -3' miRNA: 3'- gCGGCCGCU-CgAGgUGCGCagGCa-GC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 205540 | 0.66 | 0.807727 |
Target: 5'- gGCCGGCGGcgguGCcaUCUACGCGcCCauGUCc -3' miRNA: 3'- gCGGCCGCU----CG--AGGUGCGCaGG--CAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 130642 | 0.66 | 0.807727 |
Target: 5'- cCGCCaGGC-AGC-CCACGC--CCGUCa -3' miRNA: 3'- -GCGG-CCGcUCGaGGUGCGcaGGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 78179 | 0.66 | 0.791179 |
Target: 5'- aGCUGGCcaucuGCUCgacgaACGCGUacCCGUCGc -3' miRNA: 3'- gCGGCCGcu---CGAGg----UGCGCA--GGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 162657 | 0.66 | 0.799518 |
Target: 5'- aGCCuaGGCGuGuCUagacucgaCCGCGCGUCCGgagCGc -3' miRNA: 3'- gCGG--CCGCuC-GA--------GGUGCGCAGGCa--GC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 207538 | 0.66 | 0.791179 |
Target: 5'- uCGCC-GCGcGCUCCGCGuCGUCgCGcCu -3' miRNA: 3'- -GCGGcCGCuCGAGGUGC-GCAG-GCaGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 100521 | 0.66 | 0.807727 |
Target: 5'- gCGCCGGCaca---CGCGCGUCuCGUCu -3' miRNA: 3'- -GCGGCCGcucgagGUGCGCAG-GCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 22384 | 0.66 | 0.773279 |
Target: 5'- aGCCGGCcgcgugcggcaugGAGCUgucCCugGUcaCCGUCGu -3' miRNA: 3'- gCGGCCG-------------CUCGA---GGugCGcaGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 160907 | 0.66 | 0.765459 |
Target: 5'- uGUCGGCGcg--CCGCGCGUCCuGcUCGu -3' miRNA: 3'- gCGGCCGCucgaGGUGCGCAGG-C-AGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 166151 | 0.66 | 0.791179 |
Target: 5'- gCGCCGGCG-GCagCgGCGCcgaCGUCGu -3' miRNA: 3'- -GCGGCCGCuCGa-GgUGCGcagGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 99968 | 0.66 | 0.799518 |
Target: 5'- cCGCCgcGGCGuGCUCgGgcCGCGggUCGUCGu -3' miRNA: 3'- -GCGG--CCGCuCGAGgU--GCGCa-GGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 146422 | 0.66 | 0.799518 |
Target: 5'- -uCCGG-GGGC-CCGCGC-UCCGUCu -3' miRNA: 3'- gcGGCCgCUCGaGGUGCGcAGGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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