miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 166151 0.66 0.791179
Target:  5'- gCGCCGGCG-GCagCgGCGCcgaCGUCGu -3'
miRNA:   3'- -GCGGCCGCuCGa-GgUGCGcagGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 146031 0.66 0.799518
Target:  5'- aGCUGGCGGGCgacgucaUCGCGaUGUCCGa-- -3'
miRNA:   3'- gCGGCCGCUCGa------GGUGC-GCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 160907 0.66 0.765459
Target:  5'- uGUCGGCGcg--CCGCGCGUCCuGcUCGu -3'
miRNA:   3'- gCGGCCGCucgaGGUGCGCAGG-C-AGC- -5'
16097 5' -61.9 NC_004065.1 + 170125 0.66 0.786117
Target:  5'- uGCCGGgaucggguaucgagaUGGGCUCUggaaACGCGUCgggGUCGg -3'
miRNA:   3'- gCGGCC---------------GCUCGAGG----UGCGCAGg--CAGC- -5'
16097 5' -61.9 NC_004065.1 + 120553 0.66 0.782718
Target:  5'- uGCCGGCGGcGgUCgGCGCGagCGggCGg -3'
miRNA:   3'- gCGGCCGCU-CgAGgUGCGCagGCa-GC- -5'
16097 5' -61.9 NC_004065.1 + 67578 0.66 0.790339
Target:  5'- uCGCCGaaGCGcaggggccucGGCUCgagauagCGCgGCGUCCGUCGc -3'
miRNA:   3'- -GCGGC--CGC----------UCGAG-------GUG-CGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 100521 0.66 0.807727
Target:  5'- gCGCCGGCaca---CGCGCGUCuCGUCu -3'
miRNA:   3'- -GCGGCCGcucgagGUGCGCAG-GCAGc -5'
16097 5' -61.9 NC_004065.1 + 163417 0.67 0.747795
Target:  5'- aGCCcGCG-GCUCCGgauccugucCGCGUCCaUCGu -3'
miRNA:   3'- gCGGcCGCuCGAGGU---------GCGCAGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 29519 0.67 0.738829
Target:  5'- aCGCCGGCGcuGCa--GC-CGUCCGUCu -3'
miRNA:   3'- -GCGGCCGCu-CGaggUGcGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 168638 0.67 0.729785
Target:  5'- cCGCgGGCgGAGC-CgGCGCGgcgaCGUCGu -3'
miRNA:   3'- -GCGgCCG-CUCGaGgUGCGCag--GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 173901 0.67 0.729785
Target:  5'- uGCagaaGGCGAGCgCCGcCGuCGUCCGggaCGg -3'
miRNA:   3'- gCGg---CCGCUCGaGGU-GC-GCAGGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 136522 0.67 0.747795
Target:  5'- aGCCaGGCGGGUccggggugcuggUCCugGgGUCCGg-- -3'
miRNA:   3'- gCGG-CCGCUCG------------AGGugCgCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 91794 0.67 0.756673
Target:  5'- aCGgCGGCGAGCgCCucgacauccagaGCGCGgucgagaCGUCGg -3'
miRNA:   3'- -GCgGCCGCUCGaGG------------UGCGCag-----GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 203062 0.67 0.738829
Target:  5'- -uUUGGCGAGCUCCGgagcccgcCGCGgCCGcCGg -3'
miRNA:   3'- gcGGCCGCUCGAGGU--------GCGCaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 115543 0.67 0.711487
Target:  5'- uGCgGGCGGGCga---GCGUCUGUCu -3'
miRNA:   3'- gCGgCCGCUCGaggugCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 167950 0.67 0.711487
Target:  5'- gCGUCGGCGAGCUUCGuCGgcuUGUCCacgaUCGa -3'
miRNA:   3'- -GCGGCCGCUCGAGGU-GC---GCAGGc---AGC- -5'
16097 5' -61.9 NC_004065.1 + 63474 0.67 0.711487
Target:  5'- -cCCGGUGcAGCcgCCAgGCG-CCGUCGc -3'
miRNA:   3'- gcGGCCGC-UCGa-GGUgCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 65836 0.67 0.720668
Target:  5'- uGCCGGCgGAGaUCCGCGCG-CaCGaCGa -3'
miRNA:   3'- gCGGCCG-CUCgAGGUGCGCaG-GCaGC- -5'
16097 5' -61.9 NC_004065.1 + 152178 0.67 0.720668
Target:  5'- -aCCGGgGAGC-CCAcgcCGCGUCCGg-- -3'
miRNA:   3'- gcGGCCgCUCGaGGU---GCGCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 196069 0.67 0.720668
Target:  5'- gGCCcGUGAugUCCaucGCGUGUCCGUCGa -3'
miRNA:   3'- gCGGcCGCUcgAGG---UGCGCAGGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.