Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16097 | 5' | -61.9 | NC_004065.1 | + | 30586 | 0.7 | 0.53283 |
Target: 5'- cCGCCgcGGCGAGCgccucguccgcguUCCgaggcagcgacGCGUGUCCGUCc -3' miRNA: 3'- -GCGG--CCGCUCG-------------AGG-----------UGCGCAGGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 148597 | 0.7 | 0.565104 |
Target: 5'- uGCCGGUcaggaaggucaccagGuGCUCCA-GCGUCUGUCu -3' miRNA: 3'- gCGGCCG---------------CuCGAGGUgCGCAGGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 127600 | 0.69 | 0.598806 |
Target: 5'- uCGCagaggggaGGCGccGGCUCCuCcCGUCCGUCGa -3' miRNA: 3'- -GCGg-------CCGC--UCGAGGuGcGCAGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 183554 | 0.69 | 0.627109 |
Target: 5'- uGCCGGCGAgGUUCCugGaGUacaUCGUCa -3' miRNA: 3'- gCGGCCGCU-CGAGGugCgCA---GGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 171406 | 0.69 | 0.636557 |
Target: 5'- aGaCCGGCGA-CUCCGcCGCG-CgCGUCGa -3' miRNA: 3'- gC-GGCCGCUcGAGGU-GCGCaG-GCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 33925 | 0.69 | 0.608227 |
Target: 5'- cCGuuGGCGuGGCgagCCGCGCGUUCuUCa -3' miRNA: 3'- -GCggCCGC-UCGa--GGUGCGCAGGcAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 139915 | 0.69 | 0.633723 |
Target: 5'- gGCCGGCG-GCgCCA-GCGgguugaacuucgucUCCGUCGa -3' miRNA: 3'- gCGGCCGCuCGaGGUgCGC--------------AGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 1013 | 0.69 | 0.627109 |
Target: 5'- gGCCGagugcGCGAucucGCUCCGCGCGcUCCcUCGc -3' miRNA: 3'- gCGGC-----CGCU----CGAGGUGCGC-AGGcAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 200375 | 0.69 | 0.624274 |
Target: 5'- uCGCCGGCGAGgagggacgcgucuaCaUCUACGCGcCCGacgUCGa -3' miRNA: 3'- -GCGGCCGCUC--------------G-AGGUGCGCaGGC---AGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 141607 | 0.69 | 0.608227 |
Target: 5'- aCGgCGGCGGGCUCCGC-UG-CCGgCGg -3' miRNA: 3'- -GCgGCCGCUCGAGGUGcGCaGGCaGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 100402 | 0.69 | 0.588468 |
Target: 5'- aGCCGGCGGGUccaguucUCCGCGCuGaCCG-CGc -3' miRNA: 3'- gCGGCCGCUCG-------AGGUGCG-CaGGCaGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 202696 | 0.69 | 0.636557 |
Target: 5'- uCGCaUGGCG-GUUCCGCGCGUCUcuUCa -3' miRNA: 3'- -GCG-GCCGCuCGAGGUGCGCAGGc-AGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 146274 | 0.69 | 0.636557 |
Target: 5'- -uCCGcGCGAGUUCCugGCcUUCGUCu -3' miRNA: 3'- gcGGC-CGCUCGAGGugCGcAGGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 105559 | 0.69 | 0.589406 |
Target: 5'- -cCCGGCGcAGCggcaCgGCGCG-CCGUCGg -3' miRNA: 3'- gcGGCCGC-UCGa---GgUGCGCaGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 136304 | 0.68 | 0.66486 |
Target: 5'- aGCCGGgGAGCuggUCCugGagGUCCGg-- -3' miRNA: 3'- gCGGCCgCUCG---AGGugCg-CAGGCagc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 138841 | 0.68 | 0.655439 |
Target: 5'- aCGCCGaCGGcGCUUC-CGCGgCCGUCGc -3' miRNA: 3'- -GCGGCcGCU-CGAGGuGCGCaGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 149703 | 0.68 | 0.655439 |
Target: 5'- aCGCCGGgGGGCcgcggCCGCGCcggCCcUCGg -3' miRNA: 3'- -GCGGCCgCUCGa----GGUGCGca-GGcAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 109898 | 0.68 | 0.683627 |
Target: 5'- gCGUCGGgGGGUcccggcucgUCCGcCGCGgccgCCGUCGc -3' miRNA: 3'- -GCGGCCgCUCG---------AGGU-GCGCa---GGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 96398 | 0.68 | 0.655439 |
Target: 5'- gGCuCGGCGAaCUCCuCGuCGUCCGccUCGa -3' miRNA: 3'- gCG-GCCGCUcGAGGuGC-GCAGGC--AGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 67874 | 0.68 | 0.646003 |
Target: 5'- aGCCGGCGGccgaucagguuGC-CCGaGCGUCUGUCc -3' miRNA: 3'- gCGGCCGCU-----------CGaGGUgCGCAGGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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