miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 111775 1.08 0.001823
Target:  5'- gCGCCGGCGAGCUCCACGCGUCCGUCGa -3'
miRNA:   3'- -GCGGCCGCUCGAGGUGCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 1250 0.77 0.223423
Target:  5'- -uCCGGCG-GUUCC-CGCGUCCGUCa -3'
miRNA:   3'- gcGGCCGCuCGAGGuGCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 170483 0.76 0.266949
Target:  5'- cCGCuCGGCGAGCUCUuCGUcuGUCaCGUCGg -3'
miRNA:   3'- -GCG-GCCGCUCGAGGuGCG--CAG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 203511 0.73 0.389248
Target:  5'- uGCCGGCGGGgUCCGuCGCGUgacaugucuucuUCGUCu -3'
miRNA:   3'- gCGGCCGCUCgAGGU-GCGCA------------GGCAGc -5'
16097 5' -61.9 NC_004065.1 + 119249 0.73 0.404917
Target:  5'- uCGUCGGCGAGUUUCucUGCG-CCGUCa -3'
miRNA:   3'- -GCGGCCGCUCGAGGu-GCGCaGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 225663 0.73 0.404917
Target:  5'- cCGCCGuCGcGCUCCACGCGcagCCGUUu -3'
miRNA:   3'- -GCGGCcGCuCGAGGUGCGCa--GGCAGc -5'
16097 5' -61.9 NC_004065.1 + 160611 0.72 0.445775
Target:  5'- gGUCGGCGcGCaCCugGCGccCCGUCGg -3'
miRNA:   3'- gCGGCCGCuCGaGGugCGCa-GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 99664 0.72 0.471366
Target:  5'- aGCCGGCGGcGCggcgCCGacaGCGUCCGg-- -3'
miRNA:   3'- gCGGCCGCU-CGa---GGUg--CGCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 229655 0.71 0.496793
Target:  5'- gGCCGGCGgcaguggcaggugGGCgucggggCGCGCGUCCGcUCGg -3'
miRNA:   3'- gCGGCCGC-------------UCGag-----GUGCGCAGGC-AGC- -5'
16097 5' -61.9 NC_004065.1 + 64007 0.71 0.506599
Target:  5'- aGaCGGUGAcgGcCUCC-CGCGUCCGUCGu -3'
miRNA:   3'- gCgGCCGCU--C-GAGGuGCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 88418 0.71 0.515585
Target:  5'- cCGCCGGCagcgGAGC-CCGC-CG-CCGUCGc -3'
miRNA:   3'- -GCGGCCG----CUCGaGGUGcGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 30586 0.7 0.53283
Target:  5'- cCGCCgcGGCGAGCgccucguccgcguUCCgaggcagcgacGCGUGUCCGUCc -3'
miRNA:   3'- -GCGG--CCGCUCG-------------AGG-----------UGCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 54472 0.7 0.533743
Target:  5'- uGCC-GCGAGCg-CACGCGcagccaccUCCGUCGa -3'
miRNA:   3'- gCGGcCGCUCGagGUGCGC--------AGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 160568 0.7 0.533743
Target:  5'- aGCCGGCGcgacaucuGCgaCACGaUGUCCGUCGa -3'
miRNA:   3'- gCGGCCGCu-------CGagGUGC-GCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 153640 0.7 0.542908
Target:  5'- aCGgCGGCGAGCucaUCCGCGgCGgcgCCGgcgCGa -3'
miRNA:   3'- -GCgGCCGCUCG---AGGUGC-GCa--GGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 116665 0.7 0.542908
Target:  5'- uGCCGuuGuuCUCCGCGUGcCCGUCGa -3'
miRNA:   3'- gCGGCcgCucGAGGUGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 32935 0.7 0.542908
Target:  5'- gGCCGGUcGGCUcCCGCGCGgaugcgggCGUCGa -3'
miRNA:   3'- gCGGCCGcUCGA-GGUGCGCag------GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 67339 0.7 0.552124
Target:  5'- cCGCCGGuCGAauggcGCUCCggACGCG-CgGUCGa -3'
miRNA:   3'- -GCGGCC-GCU-----CGAGG--UGCGCaGgCAGC- -5'
16097 5' -61.9 NC_004065.1 + 90126 0.7 0.560459
Target:  5'- cCGCCGGCcggaGGCcCCGCGgccaccuCGUCCGUCc -3'
miRNA:   3'- -GCGGCCGc---UCGaGGUGC-------GCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 148597 0.7 0.565104
Target:  5'- uGCCGGUcaggaaggucaccagGuGCUCCA-GCGUCUGUCu -3'
miRNA:   3'- gCGGCCG---------------CuCGAGGUgCGCAGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.