miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 115852 0.7 0.567896
Target:  5'- gGCCGGCGGcgcGCUCCucagagucccgggaaGCGUCgCGUCu -3'
miRNA:   3'- gCGGCCGCU---CGAGGug-------------CGCAG-GCAGc -5'
16097 5' -61.9 NC_004065.1 + 34118 0.7 0.580033
Target:  5'- gCGCCGGCagaacGAG-UCCGC-CGUCuCGUCGa -3'
miRNA:   3'- -GCGGCCG-----CUCgAGGUGcGCAG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 100402 0.69 0.588468
Target:  5'- aGCCGGCGGGUccaguucUCCGCGCuGaCCG-CGc -3'
miRNA:   3'- gCGGCCGCUCG-------AGGUGCG-CaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 105559 0.69 0.589406
Target:  5'- -cCCGGCGcAGCggcaCgGCGCG-CCGUCGg -3'
miRNA:   3'- gcGGCCGC-UCGa---GgUGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 127600 0.69 0.598806
Target:  5'- uCGCagaggggaGGCGccGGCUCCuCcCGUCCGUCGa -3'
miRNA:   3'- -GCGg-------CCGC--UCGAGGuGcGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 141607 0.69 0.608227
Target:  5'- aCGgCGGCGGGCUCCGC-UG-CCGgCGg -3'
miRNA:   3'- -GCgGCCGCUCGAGGUGcGCaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 33925 0.69 0.608227
Target:  5'- cCGuuGGCGuGGCgagCCGCGCGUUCuUCa -3'
miRNA:   3'- -GCggCCGC-UCGa--GGUGCGCAGGcAGc -5'
16097 5' -61.9 NC_004065.1 + 200375 0.69 0.624274
Target:  5'- uCGCCGGCGAGgagggacgcgucuaCaUCUACGCGcCCGacgUCGa -3'
miRNA:   3'- -GCGGCCGCUC--------------G-AGGUGCGCaGGC---AGC- -5'
16097 5' -61.9 NC_004065.1 + 183554 0.69 0.627109
Target:  5'- uGCCGGCGAgGUUCCugGaGUacaUCGUCa -3'
miRNA:   3'- gCGGCCGCU-CGAGGugCgCA---GGCAGc -5'
16097 5' -61.9 NC_004065.1 + 1013 0.69 0.627109
Target:  5'- gGCCGagugcGCGAucucGCUCCGCGCGcUCCcUCGc -3'
miRNA:   3'- gCGGC-----CGCU----CGAGGUGCGC-AGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 139915 0.69 0.633723
Target:  5'- gGCCGGCG-GCgCCA-GCGgguugaacuucgucUCCGUCGa -3'
miRNA:   3'- gCGGCCGCuCGaGGUgCGC--------------AGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 146274 0.69 0.636557
Target:  5'- -uCCGcGCGAGUUCCugGCcUUCGUCu -3'
miRNA:   3'- gcGGC-CGCUCGAGGugCGcAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 202696 0.69 0.636557
Target:  5'- uCGCaUGGCG-GUUCCGCGCGUCUcuUCa -3'
miRNA:   3'- -GCG-GCCGCuCGAGGUGCGCAGGc-AGc -5'
16097 5' -61.9 NC_004065.1 + 171406 0.69 0.636557
Target:  5'- aGaCCGGCGA-CUCCGcCGCG-CgCGUCGa -3'
miRNA:   3'- gC-GGCCGCUcGAGGU-GCGCaG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 67874 0.68 0.646003
Target:  5'- aGCCGGCGGccgaucagguuGC-CCGaGCGUCUGUCc -3'
miRNA:   3'- gCGGCCGCU-----------CGaGGUgCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 96398 0.68 0.655439
Target:  5'- gGCuCGGCGAaCUCCuCGuCGUCCGccUCGa -3'
miRNA:   3'- gCG-GCCGCUcGAGGuGC-GCAGGC--AGC- -5'
16097 5' -61.9 NC_004065.1 + 138841 0.68 0.655439
Target:  5'- aCGCCGaCGGcGCUUC-CGCGgCCGUCGc -3'
miRNA:   3'- -GCGGCcGCU-CGAGGuGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 149703 0.68 0.655439
Target:  5'- aCGCCGGgGGGCcgcggCCGCGCcggCCcUCGg -3'
miRNA:   3'- -GCGGCCgCUCGa----GGUGCGca-GGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 136304 0.68 0.66486
Target:  5'- aGCCGGgGAGCuggUCCugGagGUCCGg-- -3'
miRNA:   3'- gCGGCCgCUCG---AGGugCg-CAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 57460 0.68 0.66486
Target:  5'- gCGUCGGCGGGCcgaUCCcguguaACGUGUCguUGUCGu -3'
miRNA:   3'- -GCGGCCGCUCG---AGG------UGCGCAG--GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.