miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 22384 0.66 0.773279
Target:  5'- aGCCGGCcgcgugcggcaugGAGCUgucCCugGUcaCCGUCGu -3'
miRNA:   3'- gCGGCCG-------------CUCGA---GGugCGcaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 90956 0.66 0.765459
Target:  5'- aCGgCGGUGAGCUUCugGCuGguguagCCGUgGu -3'
miRNA:   3'- -GCgGCCGCUCGAGGugCG-Ca-----GGCAgC- -5'
16097 5' -61.9 NC_004065.1 + 165881 0.66 0.765459
Target:  5'- cCGaaGGCGAgGC-CgCACGCGcugCCGUCGu -3'
miRNA:   3'- -GCggCCGCU-CGaG-GUGCGCa--GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 167699 0.66 0.765459
Target:  5'- uCGCCGucucCGAGCUCUGCuGCaguucucugGUCUGUCGa -3'
miRNA:   3'- -GCGGCc---GCUCGAGGUG-CG---------CAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 200752 0.66 0.765459
Target:  5'- aCGa-GGCG-GCU-CACGCGUCgGUCGc -3'
miRNA:   3'- -GCggCCGCuCGAgGUGCGCAGgCAGC- -5'
16097 5' -61.9 NC_004065.1 + 160907 0.66 0.765459
Target:  5'- uGUCGGCGcg--CCGCGCGUCCuGcUCGu -3'
miRNA:   3'- gCGGCCGCucgaGGUGCGCAGG-C-AGC- -5'
16097 5' -61.9 NC_004065.1 + 102429 0.66 0.762833
Target:  5'- aGCCGGCGc-CUCCccucugcgaccugaACgGCGUgCCGUCGu -3'
miRNA:   3'- gCGGCCGCucGAGG--------------UG-CGCA-GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 33217 0.67 0.760199
Target:  5'- uCGCgGGCGAGgUguccgcagacgagggUCugGUGUUCGUCGc -3'
miRNA:   3'- -GCGgCCGCUCgA---------------GGugCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 91794 0.67 0.756673
Target:  5'- aCGgCGGCGAGCgCCucgacauccagaGCGCGgucgagaCGUCGg -3'
miRNA:   3'- -GCgGCCGCUCGaGG------------UGCGCag-----GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 76377 0.67 0.756673
Target:  5'- gCGCCGGCgccgccgcggauGAGCUcgCCGC-CGUCCGa-- -3'
miRNA:   3'- -GCGGCCG------------CUCGA--GGUGcGCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 91716 0.67 0.756673
Target:  5'- uGUCcGCGAGCUCC-CGCGUCUu--- -3'
miRNA:   3'- gCGGcCGCUCGAGGuGCGCAGGcagc -5'
16097 5' -61.9 NC_004065.1 + 177376 0.67 0.756673
Target:  5'- cCGCCaGCG-GCggCCAagGUGUUCGUCGg -3'
miRNA:   3'- -GCGGcCGCuCGa-GGUg-CGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 123261 0.67 0.75579
Target:  5'- aGuuGGUGccCUCCACGCagauguacugcagGUCCGUCu -3'
miRNA:   3'- gCggCCGCucGAGGUGCG-------------CAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 136522 0.67 0.747795
Target:  5'- aGCCaGGCGGGUccggggugcuggUCCugGgGUCCGg-- -3'
miRNA:   3'- gCGG-CCGCUCG------------AGGugCgCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 163417 0.67 0.747795
Target:  5'- aGCCcGCG-GCUCCGgauccugucCGCGUCCaUCGu -3'
miRNA:   3'- gCGGcCGCuCGAGGU---------GCGCAGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 29519 0.67 0.738829
Target:  5'- aCGCCGGCGcuGCa--GC-CGUCCGUCu -3'
miRNA:   3'- -GCGGCCGCu-CGaggUGcGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 203062 0.67 0.738829
Target:  5'- -uUUGGCGAGCUCCGgagcccgcCGCGgCCGcCGg -3'
miRNA:   3'- gcGGCCGCUCGAGGU--------GCGCaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 168638 0.67 0.729785
Target:  5'- cCGCgGGCgGAGC-CgGCGCGgcgaCGUCGu -3'
miRNA:   3'- -GCGgCCG-CUCGaGgUGCGCag--GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 173901 0.67 0.729785
Target:  5'- uGCagaaGGCGAGCgCCGcCGuCGUCCGggaCGg -3'
miRNA:   3'- gCGg---CCGCUCGaGGU-GC-GCAGGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 109911 0.67 0.729785
Target:  5'- gCGCCGGCGAG-UCaa-GCG-CCGUaCGg -3'
miRNA:   3'- -GCGGCCGCUCgAGgugCGCaGGCA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.