miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 168638 0.67 0.729785
Target:  5'- cCGCgGGCgGAGC-CgGCGCGgcgaCGUCGu -3'
miRNA:   3'- -GCGgCCG-CUCGaGgUGCGCag--GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 171448 0.67 0.727967
Target:  5'- uCGUCGGCGAGCUCauccgcuggauCGCG-CCGa-- -3'
miRNA:   3'- -GCGGCCGCUCGAGgu---------GCGCaGGCagc -5'
16097 5' -61.9 NC_004065.1 + 173488 0.67 0.727057
Target:  5'- gCGCCuGCGGugucGCcgCCAcucugaagaaaucuCGCGUCCGUCGc -3'
miRNA:   3'- -GCGGcCGCU----CGa-GGU--------------GCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 152178 0.67 0.720668
Target:  5'- -aCCGGgGAGC-CCAcgcCGCGUCCGg-- -3'
miRNA:   3'- gcGGCCgCUCGaGGU---GCGCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 63084 0.67 0.720668
Target:  5'- uCGCCGGCGAGCgaCGgGCGUuggaccucaccaCCGUa- -3'
miRNA:   3'- -GCGGCCGCUCGagGUgCGCA------------GGCAgc -5'
16097 5' -61.9 NC_004065.1 + 65836 0.67 0.720668
Target:  5'- uGCCGGCgGAGaUCCGCGCG-CaCGaCGa -3'
miRNA:   3'- gCGGCCG-CUCgAGGUGCGCaG-GCaGC- -5'
16097 5' -61.9 NC_004065.1 + 196069 0.67 0.720668
Target:  5'- gGCCcGUGAugUCCaucGCGUGUCCGUCGa -3'
miRNA:   3'- gCGGcCGCUcgAGG---UGCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 167950 0.67 0.711487
Target:  5'- gCGUCGGCGAGCUUCGuCGgcuUGUCCacgaUCGa -3'
miRNA:   3'- -GCGGCCGCUCGAGGU-GC---GCAGGc---AGC- -5'
16097 5' -61.9 NC_004065.1 + 63474 0.67 0.711487
Target:  5'- -cCCGGUGcAGCcgCCAgGCG-CCGUCGc -3'
miRNA:   3'- gcGGCCGC-UCGa-GGUgCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 163368 0.67 0.711487
Target:  5'- gGcCCGGUG-GCUCUccaucagcgucaGCGCGUCCGcCa -3'
miRNA:   3'- gC-GGCCGCuCGAGG------------UGCGCAGGCaGc -5'
16097 5' -61.9 NC_004065.1 + 115543 0.67 0.711487
Target:  5'- uGCgGGCGGGCga---GCGUCUGUCu -3'
miRNA:   3'- gCGgCCGCUCGaggugCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 133435 0.68 0.702248
Target:  5'- -cCCGGgGAGUgcagcgucgCCACGCGUCgcggcuCGUCGg -3'
miRNA:   3'- gcGGCCgCUCGa--------GGUGCGCAG------GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 63284 0.68 0.702248
Target:  5'- aGCuaCGGCGAGCUCC-CGCuGcCCaUCGa -3'
miRNA:   3'- gCG--GCCGCUCGAGGuGCG-CaGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 169702 0.68 0.702248
Target:  5'- gCGCCGGCaAGCUCCugACGC-UCUaUCGc -3'
miRNA:   3'- -GCGGCCGcUCGAGG--UGCGcAGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 163268 0.68 0.683627
Target:  5'- gCGCCGGCGc-CUCCuCGCGauUCCGguaCGg -3'
miRNA:   3'- -GCGGCCGCucGAGGuGCGC--AGGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 109898 0.68 0.683627
Target:  5'- gCGUCGGgGGGUcccggcucgUCCGcCGCGgccgCCGUCGc -3'
miRNA:   3'- -GCGGCCgCUCG---------AGGU-GCGCa---GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 136304 0.68 0.66486
Target:  5'- aGCCGGgGAGCuggUCCugGagGUCCGg-- -3'
miRNA:   3'- gCGGCCgCUCG---AGGugCg-CAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 57460 0.68 0.66486
Target:  5'- gCGUCGGCGGGCcgaUCCcguguaACGUGUCguUGUCGu -3'
miRNA:   3'- -GCGGCCGCUCG---AGG------UGCGCAG--GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 195256 0.68 0.66486
Target:  5'- uCGCCgGGCGGGCUau-CGCGUCa-UCGg -3'
miRNA:   3'- -GCGG-CCGCUCGAgguGCGCAGgcAGC- -5'
16097 5' -61.9 NC_004065.1 + 149703 0.68 0.655439
Target:  5'- aCGCCGGgGGGCcgcggCCGCGCcggCCcUCGg -3'
miRNA:   3'- -GCGGCCgCUCGa----GGUGCGca-GGcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.