miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 1013 0.69 0.627109
Target:  5'- gGCCGagugcGCGAucucGCUCCGCGCGcUCCcUCGc -3'
miRNA:   3'- gCGGC-----CGCU----CGAGGUGCGC-AGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 1250 0.77 0.223423
Target:  5'- -uCCGGCG-GUUCC-CGCGUCCGUCa -3'
miRNA:   3'- gcGGCCGCuCGAGGuGCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 18178 0.66 0.799518
Target:  5'- gCGCCGGcCGGGaCUCC-CGUgcgauagccuuGUCCG-CGg -3'
miRNA:   3'- -GCGGCC-GCUC-GAGGuGCG-----------CAGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 22384 0.66 0.773279
Target:  5'- aGCCGGCcgcgugcggcaugGAGCUgucCCugGUcaCCGUCGu -3'
miRNA:   3'- gCGGCCG-------------CUCGA---GGugCGcaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 26022 0.66 0.774143
Target:  5'- gGCCucGGCGucguccaccagcGGCUCgCACGCGg-CGUCGa -3'
miRNA:   3'- gCGG--CCGC------------UCGAG-GUGCGCagGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 29519 0.67 0.738829
Target:  5'- aCGCCGGCGcuGCa--GC-CGUCCGUCu -3'
miRNA:   3'- -GCGGCCGCu-CGaggUGcGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 30586 0.7 0.53283
Target:  5'- cCGCCgcGGCGAGCgccucguccgcguUCCgaggcagcgacGCGUGUCCGUCc -3'
miRNA:   3'- -GCGG--CCGCUCG-------------AGG-----------UGCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 32935 0.7 0.542908
Target:  5'- gGCCGGUcGGCUcCCGCGCGgaugcgggCGUCGa -3'
miRNA:   3'- gCGGCCGcUCGA-GGUGCGCag------GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 33217 0.67 0.760199
Target:  5'- uCGCgGGCGAGgUguccgcagacgagggUCugGUGUUCGUCGc -3'
miRNA:   3'- -GCGgCCGCUCgA---------------GGugCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 33925 0.69 0.608227
Target:  5'- cCGuuGGCGuGGCgagCCGCGCGUUCuUCa -3'
miRNA:   3'- -GCggCCGC-UCGa--GGUGCGCAGGcAGc -5'
16097 5' -61.9 NC_004065.1 + 34118 0.7 0.580033
Target:  5'- gCGCCGGCagaacGAG-UCCGC-CGUCuCGUCGa -3'
miRNA:   3'- -GCGGCCG-----CUCgAGGUGcGCAG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 54472 0.7 0.533743
Target:  5'- uGCC-GCGAGCg-CACGCGcagccaccUCCGUCGa -3'
miRNA:   3'- gCGGcCGCUCGagGUGCGC--------AGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 57460 0.68 0.66486
Target:  5'- gCGUCGGCGGGCcgaUCCcguguaACGUGUCguUGUCGu -3'
miRNA:   3'- -GCGGCCGCUCG---AGG------UGCGCAG--GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 60911 0.67 0.729785
Target:  5'- uGCUGGCc-GCggCC-CGCGUCUGUCa -3'
miRNA:   3'- gCGGCCGcuCGa-GGuGCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 63084 0.67 0.720668
Target:  5'- uCGCCGGCGAGCgaCGgGCGUuggaccucaccaCCGUa- -3'
miRNA:   3'- -GCGGCCGCUCGagGUgCGCA------------GGCAgc -5'
16097 5' -61.9 NC_004065.1 + 63284 0.68 0.702248
Target:  5'- aGCuaCGGCGAGCUCC-CGCuGcCCaUCGa -3'
miRNA:   3'- gCG--GCCGCUCGAGGuGCG-CaGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 63474 0.67 0.711487
Target:  5'- -cCCGGUGcAGCcgCCAgGCG-CCGUCGc -3'
miRNA:   3'- gcGGCCGC-UCGa-GGUgCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 64007 0.71 0.506599
Target:  5'- aGaCGGUGAcgGcCUCC-CGCGUCCGUCGu -3'
miRNA:   3'- gCgGCCGCU--C-GAGGuGCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 65836 0.67 0.720668
Target:  5'- uGCCGGCgGAGaUCCGCGCG-CaCGaCGa -3'
miRNA:   3'- gCGGCCG-CUCgAGGUGCGCaG-GCaGC- -5'
16097 5' -61.9 NC_004065.1 + 67339 0.7 0.552124
Target:  5'- cCGCCGGuCGAauggcGCUCCggACGCG-CgGUCGa -3'
miRNA:   3'- -GCGGCC-GCU-----CGAGG--UGCGCaGgCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.