miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 67578 0.66 0.790339
Target:  5'- uCGCCGaaGCGcaggggccucGGCUCgagauagCGCgGCGUCCGUCGc -3'
miRNA:   3'- -GCGGC--CGC----------UCGAG-------GUG-CGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 67874 0.68 0.646003
Target:  5'- aGCCGGCGGccgaucagguuGC-CCGaGCGUCUGUCc -3'
miRNA:   3'- gCGGCCGCU-----------CGaGGUgCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 75123 0.66 0.782718
Target:  5'- -uCCGGCG-GCUucgaUCGCGCGaUCGUCGa -3'
miRNA:   3'- gcGGCCGCuCGA----GGUGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 76377 0.67 0.756673
Target:  5'- gCGCCGGCgccgccgcggauGAGCUcgCCGC-CGUCCGa-- -3'
miRNA:   3'- -GCGGCCG------------CUCGA--GGUGcGCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 78179 0.66 0.791179
Target:  5'- aGCUGGCcaucuGCUCgacgaACGCGUacCCGUCGc -3'
miRNA:   3'- gCGGCCGcu---CGAGg----UGCGCA--GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 88418 0.71 0.515585
Target:  5'- cCGCCGGCagcgGAGC-CCGC-CG-CCGUCGc -3'
miRNA:   3'- -GCGGCCG----CUCGaGGUGcGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 90126 0.7 0.560459
Target:  5'- cCGCCGGCcggaGGCcCCGCGgccaccuCGUCCGUCc -3'
miRNA:   3'- -GCGGCCGc---UCGaGGUGC-------GCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 90956 0.66 0.765459
Target:  5'- aCGgCGGUGAGCUUCugGCuGguguagCCGUgGu -3'
miRNA:   3'- -GCgGCCGCUCGAGGugCG-Ca-----GGCAgC- -5'
16097 5' -61.9 NC_004065.1 + 91716 0.67 0.756673
Target:  5'- uGUCcGCGAGCUCC-CGCGUCUu--- -3'
miRNA:   3'- gCGGcCGCUCGAGGuGCGCAGGcagc -5'
16097 5' -61.9 NC_004065.1 + 91794 0.67 0.756673
Target:  5'- aCGgCGGCGAGCgCCucgacauccagaGCGCGgucgagaCGUCGg -3'
miRNA:   3'- -GCgGCCGCUCGaGG------------UGCGCag-----GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 96398 0.68 0.655439
Target:  5'- gGCuCGGCGAaCUCCuCGuCGUCCGccUCGa -3'
miRNA:   3'- gCG-GCCGCUcGAGGuGC-GCAGGC--AGC- -5'
16097 5' -61.9 NC_004065.1 + 99664 0.72 0.471366
Target:  5'- aGCCGGCGGcGCggcgCCGacaGCGUCCGg-- -3'
miRNA:   3'- gCGGCCGCU-CGa---GGUg--CGCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 99968 0.66 0.799518
Target:  5'- cCGCCgcGGCGuGCUCgGgcCGCGggUCGUCGu -3'
miRNA:   3'- -GCGG--CCGCuCGAGgU--GCGCa-GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 100402 0.69 0.588468
Target:  5'- aGCCGGCGGGUccaguucUCCGCGCuGaCCG-CGc -3'
miRNA:   3'- gCGGCCGCUCG-------AGGUGCG-CaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 100521 0.66 0.807727
Target:  5'- gCGCCGGCaca---CGCGCGUCuCGUCu -3'
miRNA:   3'- -GCGGCCGcucgagGUGCGCAG-GCAGc -5'
16097 5' -61.9 NC_004065.1 + 102429 0.66 0.762833
Target:  5'- aGCCGGCGc-CUCCccucugcgaccugaACgGCGUgCCGUCGu -3'
miRNA:   3'- gCGGCCGCucGAGG--------------UG-CGCA-GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 105559 0.69 0.589406
Target:  5'- -cCCGGCGcAGCggcaCgGCGCG-CCGUCGg -3'
miRNA:   3'- gcGGCCGC-UCGa---GgUGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 109898 0.68 0.683627
Target:  5'- gCGUCGGgGGGUcccggcucgUCCGcCGCGgccgCCGUCGc -3'
miRNA:   3'- -GCGGCCgCUCG---------AGGU-GCGCa---GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 109911 0.67 0.729785
Target:  5'- gCGCCGGCGAG-UCaa-GCG-CCGUaCGg -3'
miRNA:   3'- -GCGGCCGCUCgAGgugCGCaGGCA-GC- -5'
16097 5' -61.9 NC_004065.1 + 111775 1.08 0.001823
Target:  5'- gCGCCGGCGAGCUCCACGCGUCCGUCGa -3'
miRNA:   3'- -GCGGCCGCUCGAGGUGCGCAGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.