miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 114009 0.66 0.799518
Target:  5'- cCGUCGGCagaGAGCUgcCCcCGCGgcgCaCGUCGg -3'
miRNA:   3'- -GCGGCCG---CUCGA--GGuGCGCa--G-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 115543 0.67 0.711487
Target:  5'- uGCgGGCGGGCga---GCGUCUGUCu -3'
miRNA:   3'- gCGgCCGCUCGaggugCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 115852 0.7 0.567896
Target:  5'- gGCCGGCGGcgcGCUCCucagagucccgggaaGCGUCgCGUCu -3'
miRNA:   3'- gCGGCCGCU---CGAGGug-------------CGCAG-GCAGc -5'
16097 5' -61.9 NC_004065.1 + 116665 0.7 0.542908
Target:  5'- uGCCGuuGuuCUCCGCGUGcCCGUCGa -3'
miRNA:   3'- gCGGCcgCucGAGGUGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 119249 0.73 0.404917
Target:  5'- uCGUCGGCGAGUUUCucUGCG-CCGUCa -3'
miRNA:   3'- -GCGGCCGCUCGAGGu-GCGCaGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 120332 0.66 0.807727
Target:  5'- uCGCCGcGCGAuCUCgGCGgCGaugUCGUCGg -3'
miRNA:   3'- -GCGGC-CGCUcGAGgUGC-GCa--GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 120553 0.66 0.782718
Target:  5'- uGCCGGCGGcGgUCgGCGCGagCGggCGg -3'
miRNA:   3'- gCGGCCGCU-CgAGgUGCGCagGCa-GC- -5'
16097 5' -61.9 NC_004065.1 + 123261 0.67 0.75579
Target:  5'- aGuuGGUGccCUCCACGCagauguacugcagGUCCGUCu -3'
miRNA:   3'- gCggCCGCucGAGGUGCG-------------CAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 127600 0.69 0.598806
Target:  5'- uCGCagaggggaGGCGccGGCUCCuCcCGUCCGUCGa -3'
miRNA:   3'- -GCGg-------CCGC--UCGAGGuGcGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 130642 0.66 0.807727
Target:  5'- cCGCCaGGC-AGC-CCACGC--CCGUCa -3'
miRNA:   3'- -GCGG-CCGcUCGaGGUGCGcaGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 133435 0.68 0.702248
Target:  5'- -cCCGGgGAGUgcagcgucgCCACGCGUCgcggcuCGUCGg -3'
miRNA:   3'- gcGGCCgCUCGa--------GGUGCGCAG------GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 136304 0.68 0.66486
Target:  5'- aGCCGGgGAGCuggUCCugGagGUCCGg-- -3'
miRNA:   3'- gCGGCCgCUCG---AGGugCg-CAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 136522 0.67 0.747795
Target:  5'- aGCCaGGCGGGUccggggugcuggUCCugGgGUCCGg-- -3'
miRNA:   3'- gCGG-CCGCUCG------------AGGugCgCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 136574 0.66 0.791179
Target:  5'- aGCCGGgGAGCUggucCUGCG-GUCCGg-- -3'
miRNA:   3'- gCGGCCgCUCGA----GGUGCgCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 138841 0.68 0.655439
Target:  5'- aCGCCGaCGGcGCUUC-CGCGgCCGUCGc -3'
miRNA:   3'- -GCGGCcGCU-CGAGGuGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 139915 0.69 0.633723
Target:  5'- gGCCGGCG-GCgCCA-GCGgguugaacuucgucUCCGUCGa -3'
miRNA:   3'- gCGGCCGCuCGaGGUgCGC--------------AGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 141607 0.69 0.608227
Target:  5'- aCGgCGGCGGGCUCCGC-UG-CCGgCGg -3'
miRNA:   3'- -GCgGCCGCUCGAGGUGcGCaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 146031 0.66 0.799518
Target:  5'- aGCUGGCGGGCgacgucaUCGCGaUGUCCGa-- -3'
miRNA:   3'- gCGGCCGCUCGa------GGUGC-GCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 146274 0.69 0.636557
Target:  5'- -uCCGcGCGAGUUCCugGCcUUCGUCu -3'
miRNA:   3'- gcGGC-CGCUCGAGGugCGcAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 146422 0.66 0.799518
Target:  5'- -uCCGG-GGGC-CCGCGC-UCCGUCu -3'
miRNA:   3'- gcGGCCgCUCGaGGUGCGcAGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.