miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 229655 0.71 0.496793
Target:  5'- gGCCGGCGgcaguggcaggugGGCgucggggCGCGCGUCCGcUCGg -3'
miRNA:   3'- gCGGCCGC-------------UCGag-----GUGCGCAGGC-AGC- -5'
16097 5' -61.9 NC_004065.1 + 225663 0.73 0.404917
Target:  5'- cCGCCGuCGcGCUCCACGCGcagCCGUUu -3'
miRNA:   3'- -GCGGCcGCuCGAGGUGCGCa--GGCAGc -5'
16097 5' -61.9 NC_004065.1 + 207538 0.66 0.791179
Target:  5'- uCGCC-GCGcGCUCCGCGuCGUCgCGcCu -3'
miRNA:   3'- -GCGGcCGCuCGAGGUGC-GCAG-GCaGc -5'
16097 5' -61.9 NC_004065.1 + 205540 0.66 0.807727
Target:  5'- gGCCGGCGGcgguGCcaUCUACGCGcCCauGUCc -3'
miRNA:   3'- gCGGCCGCU----CG--AGGUGCGCaGG--CAGc -5'
16097 5' -61.9 NC_004065.1 + 203511 0.73 0.389248
Target:  5'- uGCCGGCGGGgUCCGuCGCGUgacaugucuucuUCGUCu -3'
miRNA:   3'- gCGGCCGCUCgAGGU-GCGCA------------GGCAGc -5'
16097 5' -61.9 NC_004065.1 + 203062 0.67 0.738829
Target:  5'- -uUUGGCGAGCUCCGgagcccgcCGCGgCCGcCGg -3'
miRNA:   3'- gcGGCCGCUCGAGGU--------GCGCaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 202696 0.69 0.636557
Target:  5'- uCGCaUGGCG-GUUCCGCGCGUCUcuUCa -3'
miRNA:   3'- -GCG-GCCGCuCGAGGUGCGCAGGc-AGc -5'
16097 5' -61.9 NC_004065.1 + 200752 0.66 0.765459
Target:  5'- aCGa-GGCG-GCU-CACGCGUCgGUCGc -3'
miRNA:   3'- -GCggCCGCuCGAgGUGCGCAGgCAGC- -5'
16097 5' -61.9 NC_004065.1 + 200375 0.69 0.624274
Target:  5'- uCGCCGGCGAGgagggacgcgucuaCaUCUACGCGcCCGacgUCGa -3'
miRNA:   3'- -GCGGCCGCUC--------------G-AGGUGCGCaGGC---AGC- -5'
16097 5' -61.9 NC_004065.1 + 196069 0.67 0.720668
Target:  5'- gGCCcGUGAugUCCaucGCGUGUCCGUCGa -3'
miRNA:   3'- gCGGcCGCUcgAGG---UGCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 195256 0.68 0.66486
Target:  5'- uCGCCgGGCGGGCUau-CGCGUCa-UCGg -3'
miRNA:   3'- -GCGG-CCGCUCGAgguGCGCAGgcAGC- -5'
16097 5' -61.9 NC_004065.1 + 194965 0.66 0.774143
Target:  5'- aGCUGGuCGAuGUUCCuggcCGCGUaguacagcCCGUCGg -3'
miRNA:   3'- gCGGCC-GCU-CGAGGu---GCGCA--------GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 183554 0.69 0.627109
Target:  5'- uGCCGGCGAgGUUCCugGaGUacaUCGUCa -3'
miRNA:   3'- gCGGCCGCU-CGAGGugCgCA---GGCAGc -5'
16097 5' -61.9 NC_004065.1 + 177376 0.67 0.756673
Target:  5'- cCGCCaGCG-GCggCCAagGUGUUCGUCGg -3'
miRNA:   3'- -GCGGcCGCuCGa-GGUg-CGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 173901 0.67 0.729785
Target:  5'- uGCagaaGGCGAGCgCCGcCGuCGUCCGggaCGg -3'
miRNA:   3'- gCGg---CCGCUCGaGGU-GC-GCAGGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 173488 0.67 0.727057
Target:  5'- gCGCCuGCGGugucGCcgCCAcucugaagaaaucuCGCGUCCGUCGc -3'
miRNA:   3'- -GCGGcCGCU----CGa-GGU--------------GCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 171448 0.67 0.727967
Target:  5'- uCGUCGGCGAGCUCauccgcuggauCGCG-CCGa-- -3'
miRNA:   3'- -GCGGCCGCUCGAGgu---------GCGCaGGCagc -5'
16097 5' -61.9 NC_004065.1 + 171406 0.69 0.636557
Target:  5'- aGaCCGGCGA-CUCCGcCGCG-CgCGUCGa -3'
miRNA:   3'- gC-GGCCGCUcGAGGU-GCGCaG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 170483 0.76 0.266949
Target:  5'- cCGCuCGGCGAGCUCUuCGUcuGUCaCGUCGg -3'
miRNA:   3'- -GCG-GCCGCUCGAGGuGCG--CAG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 170125 0.66 0.786117
Target:  5'- uGCCGGgaucggguaucgagaUGGGCUCUggaaACGCGUCgggGUCGg -3'
miRNA:   3'- gCGGCC---------------GCUCGAGG----UGCGCAGg--CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.