miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 169702 0.68 0.702248
Target:  5'- gCGCCGGCaAGCUCCugACGC-UCUaUCGc -3'
miRNA:   3'- -GCGGCCGcUCGAGG--UGCGcAGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 168638 0.67 0.729785
Target:  5'- cCGCgGGCgGAGC-CgGCGCGgcgaCGUCGu -3'
miRNA:   3'- -GCGgCCG-CUCGaGgUGCGCag--GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 167950 0.67 0.711487
Target:  5'- gCGUCGGCGAGCUUCGuCGgcuUGUCCacgaUCGa -3'
miRNA:   3'- -GCGGCCGCUCGAGGU-GC---GCAGGc---AGC- -5'
16097 5' -61.9 NC_004065.1 + 167699 0.66 0.765459
Target:  5'- uCGCCGucucCGAGCUCUGCuGCaguucucugGUCUGUCGa -3'
miRNA:   3'- -GCGGCc---GCUCGAGGUG-CG---------CAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 166151 0.66 0.791179
Target:  5'- gCGCCGGCG-GCagCgGCGCcgaCGUCGu -3'
miRNA:   3'- -GCGGCCGCuCGa-GgUGCGcagGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 165881 0.66 0.765459
Target:  5'- cCGaaGGCGAgGC-CgCACGCGcugCCGUCGu -3'
miRNA:   3'- -GCggCCGCU-CGaG-GUGCGCa--GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 163417 0.67 0.747795
Target:  5'- aGCCcGCG-GCUCCGgauccugucCGCGUCCaUCGu -3'
miRNA:   3'- gCGGcCGCuCGAGGU---------GCGCAGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 163368 0.67 0.711487
Target:  5'- gGcCCGGUG-GCUCUccaucagcgucaGCGCGUCCGcCa -3'
miRNA:   3'- gC-GGCCGCuCGAGG------------UGCGCAGGCaGc -5'
16097 5' -61.9 NC_004065.1 + 163268 0.68 0.683627
Target:  5'- gCGCCGGCGc-CUCCuCGCGauUCCGguaCGg -3'
miRNA:   3'- -GCGGCCGCucGAGGuGCGC--AGGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 162657 0.66 0.799518
Target:  5'- aGCCuaGGCGuGuCUagacucgaCCGCGCGUCCGgagCGc -3'
miRNA:   3'- gCGG--CCGCuC-GA--------GGUGCGCAGGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 160907 0.66 0.765459
Target:  5'- uGUCGGCGcg--CCGCGCGUCCuGcUCGu -3'
miRNA:   3'- gCGGCCGCucgaGGUGCGCAGG-C-AGC- -5'
16097 5' -61.9 NC_004065.1 + 160611 0.72 0.445775
Target:  5'- gGUCGGCGcGCaCCugGCGccCCGUCGg -3'
miRNA:   3'- gCGGCCGCuCGaGGugCGCa-GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 160568 0.7 0.533743
Target:  5'- aGCCGGCGcgacaucuGCgaCACGaUGUCCGUCGa -3'
miRNA:   3'- gCGGCCGCu-------CGagGUGC-GCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 153640 0.7 0.542908
Target:  5'- aCGgCGGCGAGCucaUCCGCGgCGgcgCCGgcgCGa -3'
miRNA:   3'- -GCgGCCGCUCG---AGGUGC-GCa--GGCa--GC- -5'
16097 5' -61.9 NC_004065.1 + 152178 0.67 0.720668
Target:  5'- -aCCGGgGAGC-CCAcgcCGCGUCCGg-- -3'
miRNA:   3'- gcGGCCgCUCGaGGU---GCGCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 149703 0.68 0.655439
Target:  5'- aCGCCGGgGGGCcgcggCCGCGCcggCCcUCGg -3'
miRNA:   3'- -GCGGCCgCUCGa----GGUGCGca-GGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 148597 0.7 0.565104
Target:  5'- uGCCGGUcaggaaggucaccagGuGCUCCA-GCGUCUGUCu -3'
miRNA:   3'- gCGGCCG---------------CuCGAGGUgCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 146422 0.66 0.799518
Target:  5'- -uCCGG-GGGC-CCGCGC-UCCGUCu -3'
miRNA:   3'- gcGGCCgCUCGaGGUGCGcAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 146274 0.69 0.636557
Target:  5'- -uCCGcGCGAGUUCCugGCcUUCGUCu -3'
miRNA:   3'- gcGGC-CGCUCGAGGugCGcAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 146031 0.66 0.799518
Target:  5'- aGCUGGCGGGCgacgucaUCGCGaUGUCCGa-- -3'
miRNA:   3'- gCGGCCGCUCGa------GGUGC-GCAGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.