miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 149703 0.68 0.655439
Target:  5'- aCGCCGGgGGGCcgcggCCGCGCcggCCcUCGg -3'
miRNA:   3'- -GCGGCCgCUCGa----GGUGCGca-GGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 148597 0.7 0.565104
Target:  5'- uGCCGGUcaggaaggucaccagGuGCUCCA-GCGUCUGUCu -3'
miRNA:   3'- gCGGCCG---------------CuCGAGGUgCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 34118 0.7 0.580033
Target:  5'- gCGCCGGCagaacGAG-UCCGC-CGUCuCGUCGa -3'
miRNA:   3'- -GCGGCCG-----CUCgAGGUGcGCAG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 100402 0.69 0.588468
Target:  5'- aGCCGGCGGGUccaguucUCCGCGCuGaCCG-CGc -3'
miRNA:   3'- gCGGCCGCUCG-------AGGUGCG-CaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 33925 0.69 0.608227
Target:  5'- cCGuuGGCGuGGCgagCCGCGCGUUCuUCa -3'
miRNA:   3'- -GCggCCGC-UCGa--GGUGCGCAGGcAGc -5'
16097 5' -61.9 NC_004065.1 + 146274 0.69 0.636557
Target:  5'- -uCCGcGCGAGUUCCugGCcUUCGUCu -3'
miRNA:   3'- gcGGC-CGCUCGAGGugCGcAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 202696 0.69 0.636557
Target:  5'- uCGCaUGGCG-GUUCCGCGCGUCUcuUCa -3'
miRNA:   3'- -GCG-GCCGCuCGAGGUGCGCAGGc-AGc -5'
16097 5' -61.9 NC_004065.1 + 67874 0.68 0.646003
Target:  5'- aGCCGGCGGccgaucagguuGC-CCGaGCGUCUGUCc -3'
miRNA:   3'- gCGGCCGCU-----------CGaGGUgCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 96398 0.68 0.655439
Target:  5'- gGCuCGGCGAaCUCCuCGuCGUCCGccUCGa -3'
miRNA:   3'- gCG-GCCGCUcGAGGuGC-GCAGGC--AGC- -5'
16097 5' -61.9 NC_004065.1 + 90126 0.7 0.560459
Target:  5'- cCGCCGGCcggaGGCcCCGCGgccaccuCGUCCGUCc -3'
miRNA:   3'- -GCGGCCGc---UCGaGGUGC-------GCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 116665 0.7 0.542908
Target:  5'- uGCCGuuGuuCUCCGCGUGcCCGUCGa -3'
miRNA:   3'- gCGGCcgCucGAGGUGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 32935 0.7 0.542908
Target:  5'- gGCCGGUcGGCUcCCGCGCGgaugcgggCGUCGa -3'
miRNA:   3'- gCGGCCGcUCGA-GGUGCGCag------GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 170483 0.76 0.266949
Target:  5'- cCGCuCGGCGAGCUCUuCGUcuGUCaCGUCGg -3'
miRNA:   3'- -GCG-GCCGCUCGAGGuGCG--CAG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 119249 0.73 0.404917
Target:  5'- uCGUCGGCGAGUUUCucUGCG-CCGUCa -3'
miRNA:   3'- -GCGGCCGCUCGAGGu-GCGCaGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 225663 0.73 0.404917
Target:  5'- cCGCCGuCGcGCUCCACGCGcagCCGUUu -3'
miRNA:   3'- -GCGGCcGCuCGAGGUGCGCa--GGCAGc -5'
16097 5' -61.9 NC_004065.1 + 229655 0.71 0.496793
Target:  5'- gGCCGGCGgcaguggcaggugGGCgucggggCGCGCGUCCGcUCGg -3'
miRNA:   3'- gCGGCCGC-------------UCGag-----GUGCGCAGGC-AGC- -5'
16097 5' -61.9 NC_004065.1 + 64007 0.71 0.506599
Target:  5'- aGaCGGUGAcgGcCUCC-CGCGUCCGUCGu -3'
miRNA:   3'- gCgGCCGCU--C-GAGGuGCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 88418 0.71 0.515585
Target:  5'- cCGCCGGCagcgGAGC-CCGC-CG-CCGUCGc -3'
miRNA:   3'- -GCGGCCG----CUCGaGGUGcGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 30586 0.7 0.53283
Target:  5'- cCGCCgcGGCGAGCgccucguccgcguUCCgaggcagcgacGCGUGUCCGUCc -3'
miRNA:   3'- -GCGG--CCGCUCG-------------AGG-----------UGCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 54472 0.7 0.533743
Target:  5'- uGCC-GCGAGCg-CACGCGcagccaccUCCGUCGa -3'
miRNA:   3'- gCGGcCGCUCGagGUGCGC--------AGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.