Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16097 | 5' | -61.9 | NC_004065.1 | + | 167950 | 0.67 | 0.711487 |
Target: 5'- gCGUCGGCGAGCUUCGuCGgcuUGUCCacgaUCGa -3' miRNA: 3'- -GCGGCCGCUCGAGGU-GC---GCAGGc---AGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 115543 | 0.67 | 0.711487 |
Target: 5'- uGCgGGCGGGCga---GCGUCUGUCu -3' miRNA: 3'- gCGgCCGCUCGaggugCGCAGGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 109898 | 0.68 | 0.683627 |
Target: 5'- gCGUCGGgGGGUcccggcucgUCCGcCGCGgccgCCGUCGc -3' miRNA: 3'- -GCGGCCgCUCG---------AGGU-GCGCa---GGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 149703 | 0.68 | 0.655439 |
Target: 5'- aCGCCGGgGGGCcgcggCCGCGCcggCCcUCGg -3' miRNA: 3'- -GCGGCCgCUCGa----GGUGCGca-GGcAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 96398 | 0.68 | 0.655439 |
Target: 5'- gGCuCGGCGAaCUCCuCGuCGUCCGccUCGa -3' miRNA: 3'- gCG-GCCGCUcGAGGuGC-GCAGGC--AGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 67874 | 0.68 | 0.646003 |
Target: 5'- aGCCGGCGGccgaucagguuGC-CCGaGCGUCUGUCc -3' miRNA: 3'- gCGGCCGCU-----------CGaGGUgCGCAGGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 202696 | 0.69 | 0.636557 |
Target: 5'- uCGCaUGGCG-GUUCCGCGCGUCUcuUCa -3' miRNA: 3'- -GCG-GCCGCuCGAGGUGCGCAGGc-AGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 146274 | 0.69 | 0.636557 |
Target: 5'- -uCCGcGCGAGUUCCugGCcUUCGUCu -3' miRNA: 3'- gcGGC-CGCUCGAGGugCGcAGGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 33925 | 0.69 | 0.608227 |
Target: 5'- cCGuuGGCGuGGCgagCCGCGCGUUCuUCa -3' miRNA: 3'- -GCggCCGC-UCGa--GGUGCGCAGGcAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 100402 | 0.69 | 0.588468 |
Target: 5'- aGCCGGCGGGUccaguucUCCGCGCuGaCCG-CGc -3' miRNA: 3'- gCGGCCGCUCG-------AGGUGCG-CaGGCaGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 34118 | 0.7 | 0.580033 |
Target: 5'- gCGCCGGCagaacGAG-UCCGC-CGUCuCGUCGa -3' miRNA: 3'- -GCGGCCG-----CUCgAGGUGcGCAG-GCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 105559 | 0.69 | 0.589406 |
Target: 5'- -cCCGGCGcAGCggcaCgGCGCG-CCGUCGg -3' miRNA: 3'- gcGGCCGC-UCGa---GgUGCGCaGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 115852 | 0.7 | 0.567896 |
Target: 5'- gGCCGGCGGcgcGCUCCucagagucccgggaaGCGUCgCGUCu -3' miRNA: 3'- gCGGCCGCU---CGAGGug-------------CGCAG-GCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 67339 | 0.7 | 0.552124 |
Target: 5'- cCGCCGGuCGAauggcGCUCCggACGCG-CgGUCGa -3' miRNA: 3'- -GCGGCC-GCU-----CGAGG--UGCGCaGgCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 153640 | 0.7 | 0.542908 |
Target: 5'- aCGgCGGCGAGCucaUCCGCGgCGgcgCCGgcgCGa -3' miRNA: 3'- -GCgGCCGCUCG---AGGUGC-GCa--GGCa--GC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 160568 | 0.7 | 0.533743 |
Target: 5'- aGCCGGCGcgacaucuGCgaCACGaUGUCCGUCGa -3' miRNA: 3'- gCGGCCGCu-------CGagGUGC-GCAGGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 99664 | 0.72 | 0.471366 |
Target: 5'- aGCCGGCGGcGCggcgCCGacaGCGUCCGg-- -3' miRNA: 3'- gCGGCCGCU-CGa---GGUg--CGCAGGCagc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 160611 | 0.72 | 0.445775 |
Target: 5'- gGUCGGCGcGCaCCugGCGccCCGUCGg -3' miRNA: 3'- gCGGCCGCuCGaGGugCGCa-GGCAGC- -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 203511 | 0.73 | 0.389248 |
Target: 5'- uGCCGGCGGGgUCCGuCGCGUgacaugucuucuUCGUCu -3' miRNA: 3'- gCGGCCGCUCgAGGU-GCGCA------------GGCAGc -5' |
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16097 | 5' | -61.9 | NC_004065.1 | + | 205540 | 0.66 | 0.807727 |
Target: 5'- gGCCGGCGGcgguGCcaUCUACGCGcCCauGUCc -3' miRNA: 3'- gCGGCCGCU----CG--AGGUGCGCaGG--CAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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