miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 133435 0.68 0.702248
Target:  5'- -cCCGGgGAGUgcagcgucgCCACGCGUCgcggcuCGUCGg -3'
miRNA:   3'- gcGGCCgCUCGa--------GGUGCGCAG------GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 195256 0.68 0.66486
Target:  5'- uCGCCgGGCGGGCUau-CGCGUCa-UCGg -3'
miRNA:   3'- -GCGG-CCGCUCGAgguGCGCAGgcAGC- -5'
16097 5' -61.9 NC_004065.1 + 141607 0.69 0.608227
Target:  5'- aCGgCGGCGGGCUCCGC-UG-CCGgCGg -3'
miRNA:   3'- -GCgGCCGCUCGAGGUGcGCaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 99664 0.72 0.471366
Target:  5'- aGCCGGCGGcGCggcgCCGacaGCGUCCGg-- -3'
miRNA:   3'- gCGGCCGCU-CGa---GGUg--CGCAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 91794 0.67 0.756673
Target:  5'- aCGgCGGCGAGCgCCucgacauccagaGCGCGgucgagaCGUCGg -3'
miRNA:   3'- -GCgGCCGCUCGaGG------------UGCGCag-----GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 171448 0.67 0.727967
Target:  5'- uCGUCGGCGAGCUCauccgcuggauCGCG-CCGa-- -3'
miRNA:   3'- -GCGGCCGCUCGAGgu---------GCGCaGGCagc -5'
16097 5' -61.9 NC_004065.1 + 136304 0.68 0.66486
Target:  5'- aGCCGGgGAGCuggUCCugGagGUCCGg-- -3'
miRNA:   3'- gCGGCCgCUCG---AGGugCg-CAGGCagc -5'
16097 5' -61.9 NC_004065.1 + 160611 0.72 0.445775
Target:  5'- gGUCGGCGcGCaCCugGCGccCCGUCGg -3'
miRNA:   3'- gCGGCCGCuCGaGGugCGCa-GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 173488 0.67 0.727057
Target:  5'- gCGCCuGCGGugucGCcgCCAcucugaagaaaucuCGCGUCCGUCGc -3'
miRNA:   3'- -GCGGcCGCU----CGa-GGU--------------GCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 203511 0.73 0.389248
Target:  5'- uGCCGGCGGGgUCCGuCGCGUgacaugucuucuUCGUCu -3'
miRNA:   3'- gCGGCCGCUCgAGGU-GCGCA------------GGCAGc -5'
16097 5' -61.9 NC_004065.1 + 57460 0.68 0.66486
Target:  5'- gCGUCGGCGGGCcgaUCCcguguaACGUGUCguUGUCGu -3'
miRNA:   3'- -GCGGCCGCUCG---AGG------UGCGCAG--GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 169702 0.68 0.702248
Target:  5'- gCGCCGGCaAGCUCCugACGC-UCUaUCGc -3'
miRNA:   3'- -GCGGCCGcUCGAGG--UGCGcAGGcAGC- -5'
16097 5' -61.9 NC_004065.1 + 139915 0.69 0.633723
Target:  5'- gGCCGGCG-GCgCCA-GCGgguugaacuucgucUCCGUCGa -3'
miRNA:   3'- gCGGCCGCuCGaGGUgCGC--------------AGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 200375 0.69 0.624274
Target:  5'- uCGCCGGCGAGgagggacgcgucuaCaUCUACGCGcCCGacgUCGa -3'
miRNA:   3'- -GCGGCCGCUC--------------G-AGGUGCGCaGGC---AGC- -5'
16097 5' -61.9 NC_004065.1 + 115852 0.7 0.567896
Target:  5'- gGCCGGCGGcgcGCUCCucagagucccgggaaGCGUCgCGUCu -3'
miRNA:   3'- gCGGCCGCU---CGAGGug-------------CGCAG-GCAGc -5'
16097 5' -61.9 NC_004065.1 + 160568 0.7 0.533743
Target:  5'- aGCCGGCGcgacaucuGCgaCACGaUGUCCGUCGa -3'
miRNA:   3'- gCGGCCGCu-------CGagGUGC-GCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 75123 0.66 0.782718
Target:  5'- -uCCGGCG-GCUucgaUCGCGCGaUCGUCGa -3'
miRNA:   3'- gcGGCCGCuCGA----GGUGCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 177376 0.67 0.756673
Target:  5'- cCGCCaGCG-GCggCCAagGUGUUCGUCGg -3'
miRNA:   3'- -GCGGcCGCuCGa-GGUg-CGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 203062 0.67 0.738829
Target:  5'- -uUUGGCGAGCUCCGgagcccgcCGCGgCCGcCGg -3'
miRNA:   3'- gcGGCCGCUCGAGGU--------GCGCaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 173901 0.67 0.729785
Target:  5'- uGCagaaGGCGAGCgCCGcCGuCGUCCGggaCGg -3'
miRNA:   3'- gCGg---CCGCUCGaGGU-GC-GCAGGCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.