miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16097 5' -61.9 NC_004065.1 + 171448 0.67 0.727967
Target:  5'- uCGUCGGCGAGCUCauccgcuggauCGCG-CCGa-- -3'
miRNA:   3'- -GCGGCCGCUCGAGgu---------GCGCaGGCagc -5'
16097 5' -61.9 NC_004065.1 + 18178 0.66 0.799518
Target:  5'- gCGCCGGcCGGGaCUCC-CGUgcgauagccuuGUCCG-CGg -3'
miRNA:   3'- -GCGGCC-GCUC-GAGGuGCG-----------CAGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 205540 0.66 0.807727
Target:  5'- gGCCGGCGGcgguGCcaUCUACGCGcCCauGUCc -3'
miRNA:   3'- gCGGCCGCU----CG--AGGUGCGCaGG--CAGc -5'
16097 5' -61.9 NC_004065.1 + 67578 0.66 0.790339
Target:  5'- uCGCCGaaGCGcaggggccucGGCUCgagauagCGCgGCGUCCGUCGc -3'
miRNA:   3'- -GCGGC--CGC----------UCGAG-------GUG-CGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 160907 0.66 0.765459
Target:  5'- uGUCGGCGcg--CCGCGCGUCCuGcUCGu -3'
miRNA:   3'- gCGGCCGCucgaGGUGCGCAGG-C-AGC- -5'
16097 5' -61.9 NC_004065.1 + 177376 0.67 0.756673
Target:  5'- cCGCCaGCG-GCggCCAagGUGUUCGUCGg -3'
miRNA:   3'- -GCGGcCGCuCGa-GGUg-CGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 130642 0.66 0.807727
Target:  5'- cCGCCaGGC-AGC-CCACGC--CCGUCa -3'
miRNA:   3'- -GCGG-CCGcUCGaGGUGCGcaGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 88418 0.71 0.515585
Target:  5'- cCGCCGGCagcgGAGC-CCGC-CG-CCGUCGc -3'
miRNA:   3'- -GCGGCCG----CUCGaGGUGcGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 100521 0.66 0.807727
Target:  5'- gCGCCGGCaca---CGCGCGUCuCGUCu -3'
miRNA:   3'- -GCGGCCGcucgagGUGCGCAG-GCAGc -5'
16097 5' -61.9 NC_004065.1 + 99968 0.66 0.799518
Target:  5'- cCGCCgcGGCGuGCUCgGgcCGCGggUCGUCGu -3'
miRNA:   3'- -GCGG--CCGCuCGAGgU--GCGCa-GGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 196069 0.67 0.720668
Target:  5'- gGCCcGUGAugUCCaucGCGUGUCCGUCGa -3'
miRNA:   3'- gCGGcCGCUcgAGG---UGCGCAGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 168638 0.67 0.729785
Target:  5'- cCGCgGGCgGAGC-CgGCGCGgcgaCGUCGu -3'
miRNA:   3'- -GCGgCCG-CUCGaGgUGCGCag--GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 29519 0.67 0.738829
Target:  5'- aCGCCGGCGcuGCa--GC-CGUCCGUCu -3'
miRNA:   3'- -GCGGCCGCu-CGaggUGcGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 65836 0.67 0.720668
Target:  5'- uGCCGGCgGAGaUCCGCGCG-CaCGaCGa -3'
miRNA:   3'- gCGGCCG-CUCgAGGUGCGCaG-GCaGC- -5'
16097 5' -61.9 NC_004065.1 + 63474 0.67 0.711487
Target:  5'- -cCCGGUGcAGCcgCCAgGCG-CCGUCGc -3'
miRNA:   3'- gcGGCCGC-UCGa-GGUgCGCaGGCAGC- -5'
16097 5' -61.9 NC_004065.1 + 123261 0.67 0.75579
Target:  5'- aGuuGGUGccCUCCACGCagauguacugcagGUCCGUCu -3'
miRNA:   3'- gCggCCGCucGAGGUGCG-------------CAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 100402 0.69 0.588468
Target:  5'- aGCCGGCGGGUccaguucUCCGCGCuGaCCG-CGc -3'
miRNA:   3'- gCGGCCGCUCG-------AGGUGCG-CaGGCaGC- -5'
16097 5' -61.9 NC_004065.1 + 34118 0.7 0.580033
Target:  5'- gCGCCGGCagaacGAG-UCCGC-CGUCuCGUCGa -3'
miRNA:   3'- -GCGGCCG-----CUCgAGGUGcGCAG-GCAGC- -5'
16097 5' -61.9 NC_004065.1 + 148597 0.7 0.565104
Target:  5'- uGCCGGUcaggaaggucaccagGuGCUCCA-GCGUCUGUCu -3'
miRNA:   3'- gCGGCCG---------------CuCGAGGUgCGCAGGCAGc -5'
16097 5' -61.9 NC_004065.1 + 146422 0.66 0.799518
Target:  5'- -uCCGG-GGGC-CCGCGC-UCCGUCu -3'
miRNA:   3'- gcGGCCgCUCGaGGUGCGcAGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.