miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16098 3' -63.9 NC_004065.1 + 201077 0.66 0.644224
Target:  5'- -cCCCGC-CUCCGGCGaCGG-AGGCGg -3'
miRNA:   3'- uaGGGCGcGGGGUCGCaGUCgUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 188334 0.66 0.644224
Target:  5'- cGUCuCCGCGUCCCucGCGaugcUCAGCcccagcgaggGGGCGc -3'
miRNA:   3'- -UAG-GGCGCGGGGu-CGC----AGUCG----------UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 81371 0.66 0.634603
Target:  5'- -gUUCGCGCacgagcaCGGCGUCcuGCAGGCAg -3'
miRNA:   3'- uaGGGCGCGgg-----GUCGCAGu-CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 65313 0.66 0.634603
Target:  5'- -cCCCGCGUggugggaCCGGCGgCGGCGgcGGCAg -3'
miRNA:   3'- uaGGGCGCGg------GGUCGCaGUCGU--CCGU- -5'
16098 3' -63.9 NC_004065.1 + 176776 0.66 0.634603
Target:  5'- cUCCuCGCGCCCCAagGUUugaGGCgAGGCGc -3'
miRNA:   3'- uAGG-GCGCGGGGUcgCAG---UCG-UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 92505 0.66 0.63364
Target:  5'- aGUCCCGCcuuuuggcccgguGCCUCGcgcgcGCGUacgGGCGGGCGg -3'
miRNA:   3'- -UAGGGCG-------------CGGGGU-----CGCAg--UCGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 154266 0.66 0.624979
Target:  5'- -cUCCGCcucCCCCGG-GUCAGCgcugGGGCAg -3'
miRNA:   3'- uaGGGCGc--GGGGUCgCAGUCG----UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 120597 0.66 0.624979
Target:  5'- ---aCGCGCCgCCAGCG-CGGCuGGUu -3'
miRNA:   3'- uaggGCGCGG-GGUCGCaGUCGuCCGu -5'
16098 3' -63.9 NC_004065.1 + 94691 0.66 0.615361
Target:  5'- gAUCUCGCgGCCCCugaccuuggagGGCGgcUCgAGCGGGCc -3'
miRNA:   3'- -UAGGGCG-CGGGG-----------UCGC--AG-UCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 228809 0.66 0.615361
Target:  5'- cGUCCUGCGCUCCGucGCGUUcuucgcguAGCAguaguaccccGGCAg -3'
miRNA:   3'- -UAGGGCGCGGGGU--CGCAG--------UCGU----------CCGU- -5'
16098 3' -63.9 NC_004065.1 + 30113 0.66 0.613439
Target:  5'- --gCUGCaGCCCCGGCGgccuggggagggCGGguGGCGg -3'
miRNA:   3'- uagGGCG-CGGGGUCGCa-----------GUCguCCGU- -5'
16098 3' -63.9 NC_004065.1 + 169848 0.66 0.596164
Target:  5'- --gCCGUGCgggCCAGCGUCgaccugugcauGGCGGGCGc -3'
miRNA:   3'- uagGGCGCGg--GGUCGCAG-----------UCGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 149626 0.66 0.596164
Target:  5'- cGUCCaC-CGUCaCCGGCGccgUCGGCAGGCc -3'
miRNA:   3'- -UAGG-GcGCGG-GGUCGC---AGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 225582 0.66 0.596164
Target:  5'- -aCCCGCgacgagcucgagGCCCgAGgGUCAGCgucAGGCc -3'
miRNA:   3'- uaGGGCG------------CGGGgUCgCAGUCG---UCCGu -5'
16098 3' -63.9 NC_004065.1 + 124601 0.66 0.586598
Target:  5'- cGUCCCGCa--CCAGCGcggccagCAGCGGGUu -3'
miRNA:   3'- -UAGGGCGcggGGUCGCa------GUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 100620 0.66 0.586598
Target:  5'- cUUCaGCaGCCCCaucAGCGUCGGC-GGCAg -3'
miRNA:   3'- uAGGgCG-CGGGG---UCGCAGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 178116 0.67 0.57706
Target:  5'- -gUCCGCaGUCUCAGCGUCAGgAagccGGCGa -3'
miRNA:   3'- uaGGGCG-CGGGGUCGCAGUCgU----CCGU- -5'
16098 3' -63.9 NC_004065.1 + 184433 0.67 0.558095
Target:  5'- cGUCCCGCGCCCCccuuagAGCAGGa- -3'
miRNA:   3'- -UAGGGCGCGGGGucgcagUCGUCCgu -5'
16098 3' -63.9 NC_004065.1 + 92534 0.67 0.558095
Target:  5'- uUCCuCGUGCCCCGGCGgCA-CGGGa- -3'
miRNA:   3'- uAGG-GCGCGGGGUCGCaGUcGUCCgu -5'
16098 3' -63.9 NC_004065.1 + 113306 0.67 0.548678
Target:  5'- cAUCCCGCGaCCCAGCGagA-CGGcGCAc -3'
miRNA:   3'- -UAGGGCGCgGGGUCGCagUcGUC-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.