miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16098 3' -63.9 NC_004065.1 + 113306 0.67 0.548678
Target:  5'- cAUCCCGCGaCCCAGCGagA-CGGcGCAc -3'
miRNA:   3'- -UAGGGCGCgGGGUCGCagUcGUC-CGU- -5'
16098 3' -63.9 NC_004065.1 + 121072 0.67 0.548678
Target:  5'- --gUCGUGCCCCAGguCGUCGgcguacugccGCAGGCGc -3'
miRNA:   3'- uagGGCGCGGGGUC--GCAGU----------CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 184494 0.67 0.539311
Target:  5'- --gCCGcCGCCgCGGCGcCGGguGGCGu -3'
miRNA:   3'- uagGGC-GCGGgGUCGCaGUCguCCGU- -5'
16098 3' -63.9 NC_004065.1 + 126420 0.67 0.529999
Target:  5'- -gCCCGCgGUCCCGGCugcgGUCcAGCAGGa- -3'
miRNA:   3'- uaGGGCG-CGGGGUCG----CAG-UCGUCCgu -5'
16098 3' -63.9 NC_004065.1 + 224677 0.67 0.539311
Target:  5'- --aCCGUGCCaCCAGCGcaUCagGGUAGGCu -3'
miRNA:   3'- uagGGCGCGG-GGUCGC--AG--UCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 132364 0.68 0.508814
Target:  5'- cAUCCUGCGCCagaucgcgaacaaaCCGGCGUCuccguGCcgcaaGGGCGg -3'
miRNA:   3'- -UAGGGCGCGG--------------GGUCGCAGu----CG-----UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 105542 0.68 0.502436
Target:  5'- -aUCCGCGCggcccuggaCCCGGCG-CAGC-GGCAc -3'
miRNA:   3'- uaGGGCGCG---------GGGUCGCaGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 105051 0.68 0.493387
Target:  5'- -aCCCGCGCCuCUGGCcgcccuUCGuGCAGGCGc -3'
miRNA:   3'- uaGGGCGCGG-GGUCGc-----AGU-CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 57432 0.68 0.481736
Target:  5'- cAUCUCGUGgucugugucucuuuUCUUAGCGUCGGCGGGCc -3'
miRNA:   3'- -UAGGGCGC--------------GGGGUCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 188543 0.68 0.475518
Target:  5'- cGUCCCGaCGCCCCGGCG-CAcGCu-GCu -3'
miRNA:   3'- -UAGGGC-GCGGGGUCGCaGU-CGucCGu -5'
16098 3' -63.9 NC_004065.1 + 163437 0.68 0.520746
Target:  5'- -gUCCGCGUCCaucGUG-CGGCAGGCGc -3'
miRNA:   3'- uaGGGCGCGGGgu-CGCaGUCGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 38177 0.68 0.511557
Target:  5'- -aUCCGCGCCagCGGCaUCAGCuucGGCAu -3'
miRNA:   3'- uaGGGCGCGGg-GUCGcAGUCGu--CCGU- -5'
16098 3' -63.9 NC_004065.1 + 42641 0.68 0.502436
Target:  5'- --aCCGCGCCgC-GCGcCAGCuGGCAa -3'
miRNA:   3'- uagGGCGCGGgGuCGCaGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 126247 0.68 0.508814
Target:  5'- -gCCCGUGCggcggaucgagccgCCCAGCGcguUCAGCAGcGCc -3'
miRNA:   3'- uaGGGCGCG--------------GGGUCGC---AGUCGUC-CGu -5'
16098 3' -63.9 NC_004065.1 + 20153 0.68 0.511557
Target:  5'- --aCCGUG-CCCAGUGUCAGCcaugcGGCGg -3'
miRNA:   3'- uagGGCGCgGGGUCGCAGUCGu----CCGU- -5'
16098 3' -63.9 NC_004065.1 + 25569 0.69 0.435705
Target:  5'- -cCCCGCGCCUgaucaucauccagaGGCGgcugagCAGCAGGCc -3'
miRNA:   3'- uaGGGCGCGGGg-------------UCGCa-----GUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 98833 0.69 0.457978
Target:  5'- aAUCUCGCGCCgCCGaUGUCAGgGGGUc -3'
miRNA:   3'- -UAGGGCGCGG-GGUcGCAGUCgUCCGu -5'
16098 3' -63.9 NC_004065.1 + 87244 0.69 0.432334
Target:  5'- --gCCGC-CCCCGGCGccaccacCAGCAGGCc -3'
miRNA:   3'- uagGGCGcGGGGUCGCa------GUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 61405 0.69 0.423974
Target:  5'- -gCCCGCGgCaCCAGCGcCAGCAGccGCu -3'
miRNA:   3'- uaGGGCGCgG-GGUCGCaGUCGUC--CGu -5'
16098 3' -63.9 NC_004065.1 + 96640 0.69 0.45711
Target:  5'- -gCCgGCGgucgcgagcucuuUCUCGGCGUCGGCGGGCu -3'
miRNA:   3'- uaGGgCGC-------------GGGGUCGCAGUCGUCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.