miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16098 3' -63.9 NC_004065.1 + 20153 0.68 0.511557
Target:  5'- --aCCGUG-CCCAGUGUCAGCcaugcGGCGg -3'
miRNA:   3'- uagGGCGCgGGGUCGCAGUCGu----CCGU- -5'
16098 3' -63.9 NC_004065.1 + 25569 0.69 0.435705
Target:  5'- -cCCCGCGCCUgaucaucauccagaGGCGgcugagCAGCAGGCc -3'
miRNA:   3'- uaGGGCGCGGGg-------------UCGCa-----GUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 30113 0.66 0.613439
Target:  5'- --gCUGCaGCCCCGGCGgccuggggagggCGGguGGCGg -3'
miRNA:   3'- uagGGCG-CGGGGUCGCa-----------GUCguCCGU- -5'
16098 3' -63.9 NC_004065.1 + 38177 0.68 0.511557
Target:  5'- -aUCCGCGCCagCGGCaUCAGCuucGGCAu -3'
miRNA:   3'- uaGGGCGCGGg-GUCGcAGUCGu--CCGU- -5'
16098 3' -63.9 NC_004065.1 + 42641 0.68 0.502436
Target:  5'- --aCCGCGCCgC-GCGcCAGCuGGCAa -3'
miRNA:   3'- uagGGCGCGGgGuCGCaGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 42722 0.71 0.33168
Target:  5'- cUCCUcCGCCCCAGUGaucgCAGCGcGGCGg -3'
miRNA:   3'- uAGGGcGCGGGGUCGCa---GUCGU-CCGU- -5'
16098 3' -63.9 NC_004065.1 + 45536 0.69 0.41571
Target:  5'- -aCCCgGCGCCgCGGCGgCGGC-GGCAg -3'
miRNA:   3'- uaGGG-CGCGGgGUCGCaGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 57432 0.68 0.481736
Target:  5'- cAUCUCGUGgucugugucucuuuUCUUAGCGUCGGCGGGCc -3'
miRNA:   3'- -UAGGGCGC--------------GGGGUCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 61405 0.69 0.423974
Target:  5'- -gCCCGCGgCaCCAGCGcCAGCAGccGCu -3'
miRNA:   3'- uaGGGCGCgG-GGUCGCaGUCGUC--CGu -5'
16098 3' -63.9 NC_004065.1 + 65313 0.66 0.634603
Target:  5'- -cCCCGCGUggugggaCCGGCGgCGGCGgcGGCAg -3'
miRNA:   3'- uaGGGCGCGg------GGUCGCaGUCGU--CCGU- -5'
16098 3' -63.9 NC_004065.1 + 78811 0.71 0.317128
Target:  5'- -cCCCGCGCCggcgguaCCGGUGaUCAGgAGGCGg -3'
miRNA:   3'- uaGGGCGCGG-------GGUCGC-AGUCgUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 81371 0.66 0.634603
Target:  5'- -gUUCGCGCacgagcaCGGCGUCcuGCAGGCAg -3'
miRNA:   3'- uaGGGCGCGgg-----GUCGCAGu-CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 87244 0.69 0.432334
Target:  5'- --gCCGC-CCCCGGCGccaccacCAGCAGGCc -3'
miRNA:   3'- uagGGCGcGGGGUCGCa------GUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 92505 0.66 0.63364
Target:  5'- aGUCCCGCcuuuuggcccgguGCCUCGcgcgcGCGUacgGGCGGGCGg -3'
miRNA:   3'- -UAGGGCG-------------CGGGGU-----CGCAg--UCGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 92534 0.67 0.558095
Target:  5'- uUCCuCGUGCCCCGGCGgCA-CGGGa- -3'
miRNA:   3'- uAGG-GCGCGGGGUCGCaGUcGUCCgu -5'
16098 3' -63.9 NC_004065.1 + 94691 0.66 0.615361
Target:  5'- gAUCUCGCgGCCCCugaccuuggagGGCGgcUCgAGCGGGCc -3'
miRNA:   3'- -UAGGGCG-CGGGG-----------UCGC--AG-UCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 95948 0.72 0.29783
Target:  5'- uUCCUGagguugaGCUCCuGCGUCAGCGGGUu -3'
miRNA:   3'- uAGGGCg------CGGGGuCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 96640 0.69 0.45711
Target:  5'- -gCCgGCGgucgcgagcucuuUCUCGGCGUCGGCGGGCu -3'
miRNA:   3'- uaGGgCGC-------------GGGGUCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 98833 0.69 0.457978
Target:  5'- aAUCUCGCGCCgCCGaUGUCAGgGGGUc -3'
miRNA:   3'- -UAGGGCGCGG-GGUcGCAGUCgUCCGu -5'
16098 3' -63.9 NC_004065.1 + 100620 0.66 0.586598
Target:  5'- cUUCaGCaGCCCCaucAGCGUCGGC-GGCAg -3'
miRNA:   3'- uAGGgCG-CGGGG---UCGCAGUCGuCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.