Results 1 - 20 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 228809 | 0.66 | 0.615361 |
Target: 5'- cGUCCUGCGCUCCGucGCGUUcuucgcguAGCAguaguaccccGGCAg -3' miRNA: 3'- -UAGGGCGCGGGGU--CGCAG--------UCGU----------CCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 225582 | 0.66 | 0.596164 |
Target: 5'- -aCCCGCgacgagcucgagGCCCgAGgGUCAGCgucAGGCc -3' miRNA: 3'- uaGGGCG------------CGGGgUCgCAGUCG---UCCGu -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 224677 | 0.67 | 0.539311 |
Target: 5'- --aCCGUGCCaCCAGCGcaUCagGGUAGGCu -3' miRNA: 3'- uagGGCGCGG-GGUCGC--AG--UCGUCCGu -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 201077 | 0.66 | 0.644224 |
Target: 5'- -cCCCGC-CUCCGGCGaCGG-AGGCGg -3' miRNA: 3'- uaGGGCGcGGGGUCGCaGUCgUCCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 191870 | 0.74 | 0.207572 |
Target: 5'- gAUCgCCGCGUcuUCCAGCGUCAGCAuGCGc -3' miRNA: 3'- -UAG-GGCGCG--GGGUCGCAGUCGUcCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 188543 | 0.68 | 0.475518 |
Target: 5'- cGUCCCGaCGCCCCGGCG-CAcGCu-GCu -3' miRNA: 3'- -UAGGGC-GCGGGGUCGCaGU-CGucCGu -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 188334 | 0.66 | 0.644224 |
Target: 5'- cGUCuCCGCGUCCCucGCGaugcUCAGCcccagcgaggGGGCGc -3' miRNA: 3'- -UAG-GGCGCGGGGu-CGC----AGUCG----------UCCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 184494 | 0.67 | 0.539311 |
Target: 5'- --gCCGcCGCCgCGGCGcCGGguGGCGu -3' miRNA: 3'- uagGGC-GCGGgGUCGCaGUCguCCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 184433 | 0.67 | 0.558095 |
Target: 5'- cGUCCCGCGCCCCccuuagAGCAGGa- -3' miRNA: 3'- -UAGGGCGCGGGGucgcagUCGUCCgu -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 178116 | 0.67 | 0.57706 |
Target: 5'- -gUCCGCaGUCUCAGCGUCAGgAagccGGCGa -3' miRNA: 3'- uaGGGCG-CGGGGUCGCAGUCgU----CCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 176776 | 0.66 | 0.634603 |
Target: 5'- cUCCuCGCGCCCCAagGUUugaGGCgAGGCGc -3' miRNA: 3'- uAGG-GCGCGGGGUcgCAG---UCG-UCCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 174606 | 0.7 | 0.375919 |
Target: 5'- -aCCCGCGCCCCGGa--CAGCccaucAGGCc -3' miRNA: 3'- uaGGGCGCGGGGUCgcaGUCG-----UCCGu -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 169848 | 0.66 | 0.596164 |
Target: 5'- --gCCGUGCgggCCAGCGUCgaccugugcauGGCGGGCGc -3' miRNA: 3'- uagGGCGCGg--GGUCGCAG-----------UCGUCCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 167815 | 0.72 | 0.28506 |
Target: 5'- uUCCCGCuCCCCGGUG-CAGCAcaGGCc -3' miRNA: 3'- uAGGGCGcGGGGUCGCaGUCGU--CCGu -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 164477 | 0.7 | 0.406736 |
Target: 5'- -aCCCGCcggcgacGCgCCCAGCGUCAGCu-GCGu -3' miRNA: 3'- uaGGGCG-------CG-GGGUCGCAGUCGucCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 164129 | 0.75 | 0.180334 |
Target: 5'- uUCCagGCGCCgCGGCaUCAGCAGGCGg -3' miRNA: 3'- uAGGg-CGCGGgGUCGcAGUCGUCCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 163437 | 0.68 | 0.520746 |
Target: 5'- -gUCCGCGUCCaucGUG-CGGCAGGCGc -3' miRNA: 3'- uaGGGCGCGGGgu-CGCaGUCGUCCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 154266 | 0.66 | 0.624979 |
Target: 5'- -cUCCGCcucCCCCGG-GUCAGCgcugGGGCAg -3' miRNA: 3'- uaGGGCGc--GGGGUCgCAGUCG----UCCGU- -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 151525 | 0.67 | 0.539311 |
Target: 5'- -aUCCGCGCCCUGGaCGgCGGCAagGGCc -3' miRNA: 3'- uaGGGCGCGGGGUC-GCaGUCGU--CCGu -5' |
|||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 149626 | 0.66 | 0.596164 |
Target: 5'- cGUCCaC-CGUCaCCGGCGccgUCGGCAGGCc -3' miRNA: 3'- -UAGG-GcGCGG-GGUCGC---AGUCGUCCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home