miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16098 3' -63.9 NC_004065.1 + 147896 0.73 0.272725
Target:  5'- -gUCCGCGCCgCCGGauaCGUCAGCcGGGCGc -3'
miRNA:   3'- uaGGGCGCGG-GGUC---GCAGUCG-UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 132364 0.68 0.508814
Target:  5'- cAUCCUGCGCCagaucgcgaacaaaCCGGCGUCuccguGCcgcaaGGGCGg -3'
miRNA:   3'- -UAGGGCGCGG--------------GGUCGCAGu----CG-----UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 128562 0.7 0.407547
Target:  5'- -gUCUGCGCCCgCAGCGgCAGCGacgucGGCGg -3'
miRNA:   3'- uaGGGCGCGGG-GUCGCaGUCGU-----CCGU- -5'
16098 3' -63.9 NC_004065.1 + 126420 0.67 0.529999
Target:  5'- -gCCCGCgGUCCCGGCugcgGUCcAGCAGGa- -3'
miRNA:   3'- uaGGGCG-CGGGGUCG----CAG-UCGUCCgu -5'
16098 3' -63.9 NC_004065.1 + 126247 0.68 0.508814
Target:  5'- -gCCCGUGCggcggaucgagccgCCCAGCGcguUCAGCAGcGCc -3'
miRNA:   3'- uaGGGCGCG--------------GGGUCGC---AGUCGUC-CGu -5'
16098 3' -63.9 NC_004065.1 + 124731 0.74 0.238292
Target:  5'- -gCCCGCGCCgCAcGCGUgguguucagcaCGGCGGGCAc -3'
miRNA:   3'- uaGGGCGCGGgGU-CGCA-----------GUCGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 124601 0.66 0.586598
Target:  5'- cGUCCCGCa--CCAGCGcggccagCAGCGGGUu -3'
miRNA:   3'- -UAGGGCGcggGGUCGCa------GUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 121072 0.67 0.548678
Target:  5'- --gUCGUGCCCCAGguCGUCGgcguacugccGCAGGCGc -3'
miRNA:   3'- uagGGCGCGGGGUC--GCAGU----------CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 120597 0.66 0.624979
Target:  5'- ---aCGCGCCgCCAGCG-CGGCuGGUu -3'
miRNA:   3'- uaggGCGCGG-GGUCGCaGUCGuCCGu -5'
16098 3' -63.9 NC_004065.1 + 113306 0.67 0.548678
Target:  5'- cAUCCCGCGaCCCAGCGagA-CGGcGCAc -3'
miRNA:   3'- -UAGGGCGCgGGGUCGCagUcGUC-CGU- -5'
16098 3' -63.9 NC_004065.1 + 113135 1.05 0.001309
Target:  5'- gAUCCCGCGCCCCAGCGUCAGCAGGCAc -3'
miRNA:   3'- -UAGGGCGCGGGGUCGCAGUCGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 105542 0.68 0.502436
Target:  5'- -aUCCGCGCggcccuggaCCCGGCG-CAGC-GGCAc -3'
miRNA:   3'- uaGGGCGCG---------GGGUCGCaGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 105051 0.68 0.493387
Target:  5'- -aCCCGCGCCuCUGGCcgcccuUCGuGCAGGCGc -3'
miRNA:   3'- uaGGGCGCGG-GGUCGc-----AGU-CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 102375 0.76 0.176114
Target:  5'- gGUCCCGcCGCCCuCGGCGccgCAGC-GGCAg -3'
miRNA:   3'- -UAGGGC-GCGGG-GUCGCa--GUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 100620 0.66 0.586598
Target:  5'- cUUCaGCaGCCCCaucAGCGUCGGC-GGCAg -3'
miRNA:   3'- uAGGgCG-CGGGG---UCGCAGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 98833 0.69 0.457978
Target:  5'- aAUCUCGCGCCgCCGaUGUCAGgGGGUc -3'
miRNA:   3'- -UAGGGCGCGG-GGUcGCAGUCgUCCGu -5'
16098 3' -63.9 NC_004065.1 + 96640 0.69 0.45711
Target:  5'- -gCCgGCGgucgcgagcucuuUCUCGGCGUCGGCGGGCu -3'
miRNA:   3'- uaGGgCGC-------------GGGGUCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 95948 0.72 0.29783
Target:  5'- uUCCUGagguugaGCUCCuGCGUCAGCGGGUu -3'
miRNA:   3'- uAGGGCg------CGGGGuCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 94691 0.66 0.615361
Target:  5'- gAUCUCGCgGCCCCugaccuuggagGGCGgcUCgAGCGGGCc -3'
miRNA:   3'- -UAGGGCG-CGGGG-----------UCGC--AG-UCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 92534 0.67 0.558095
Target:  5'- uUCCuCGUGCCCCGGCGgCA-CGGGa- -3'
miRNA:   3'- uAGG-GCGCGGGGUCGCaGUcGUCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.