Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 176776 | 0.66 | 0.634603 |
Target: 5'- cUCCuCGCGCCCCAagGUUugaGGCgAGGCGc -3' miRNA: 3'- uAGG-GCGCGGGGUcgCAG---UCG-UCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 224677 | 0.67 | 0.539311 |
Target: 5'- --aCCGUGCCaCCAGCGcaUCagGGUAGGCu -3' miRNA: 3'- uagGGCGCGG-GGUCGC--AG--UCGUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 151525 | 0.67 | 0.539311 |
Target: 5'- -aUCCGCGCCCUGGaCGgCGGCAagGGCc -3' miRNA: 3'- uaGGGCGCGGGGUC-GCaGUCGU--CCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 100620 | 0.66 | 0.586598 |
Target: 5'- cUUCaGCaGCCCCaucAGCGUCGGC-GGCAg -3' miRNA: 3'- uAGGgCG-CGGGG---UCGCAGUCGuCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 124601 | 0.66 | 0.586598 |
Target: 5'- cGUCCCGCa--CCAGCGcggccagCAGCGGGUu -3' miRNA: 3'- -UAGGGCGcggGGUCGCa------GUCGUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 225582 | 0.66 | 0.596164 |
Target: 5'- -aCCCGCgacgagcucgagGCCCgAGgGUCAGCgucAGGCc -3' miRNA: 3'- uaGGGCG------------CGGGgUCgCAGUCG---UCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 149626 | 0.66 | 0.596164 |
Target: 5'- cGUCCaC-CGUCaCCGGCGccgUCGGCAGGCc -3' miRNA: 3'- -UAGG-GcGCGG-GGUCGC---AGUCGUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 30113 | 0.66 | 0.613439 |
Target: 5'- --gCUGCaGCCCCGGCGgccuggggagggCGGguGGCGg -3' miRNA: 3'- uagGGCG-CGGGGUCGCa-----------GUCguCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 92505 | 0.66 | 0.63364 |
Target: 5'- aGUCCCGCcuuuuggcccgguGCCUCGcgcgcGCGUacgGGCGGGCGg -3' miRNA: 3'- -UAGGGCG-------------CGGGGU-----CGCAg--UCGUCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 126420 | 0.67 | 0.529999 |
Target: 5'- -gCCCGCgGUCCCGGCugcgGUCcAGCAGGa- -3' miRNA: 3'- uaGGGCG-CGGGGUCG----CAG-UCGUCCgu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 38177 | 0.68 | 0.511557 |
Target: 5'- -aUCCGCGCCagCGGCaUCAGCuucGGCAu -3' miRNA: 3'- uaGGGCGCGGg-GUCGcAGUCGu--CCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 20153 | 0.68 | 0.511557 |
Target: 5'- --aCCGUG-CCCAGUGUCAGCcaugcGGCGg -3' miRNA: 3'- uagGGCGCgGGGUCGCAGUCGu----CCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 124731 | 0.74 | 0.238292 |
Target: 5'- -gCCCGCGCCgCAcGCGUgguguucagcaCGGCGGGCAc -3' miRNA: 3'- uaGGGCGCGGgGU-CGCA-----------GUCGUCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 42722 | 0.71 | 0.33168 |
Target: 5'- cUCCUcCGCCCCAGUGaucgCAGCGcGGCGg -3' miRNA: 3'- uAGGGcGCGGGGUCGCa---GUCGU-CCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 128562 | 0.7 | 0.407547 |
Target: 5'- -gUCUGCGCCCgCAGCGgCAGCGacgucGGCGg -3' miRNA: 3'- uaGGGCGCGGG-GUCGCaGUCGU-----CCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 45536 | 0.69 | 0.41571 |
Target: 5'- -aCCCgGCGCCgCGGCGgCGGC-GGCAg -3' miRNA: 3'- uaGGG-CGCGGgGUCGCaGUCGuCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 25569 | 0.69 | 0.435705 |
Target: 5'- -cCCCGCGCCUgaucaucauccagaGGCGgcugagCAGCAGGCc -3' miRNA: 3'- uaGGGCGCGGGg-------------UCGCa-----GUCGUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 96640 | 0.69 | 0.45711 |
Target: 5'- -gCCgGCGgucgcgagcucuuUCUCGGCGUCGGCGGGCu -3' miRNA: 3'- uaGGgCGC-------------GGGGUCGCAGUCGUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 42641 | 0.68 | 0.502436 |
Target: 5'- --aCCGCGCCgC-GCGcCAGCuGGCAa -3' miRNA: 3'- uagGGCGCGGgGuCGCaGUCGuCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 126247 | 0.68 | 0.508814 |
Target: 5'- -gCCCGUGCggcggaucgagccgCCCAGCGcguUCAGCAGcGCc -3' miRNA: 3'- uaGGGCGCG--------------GGGUCGC---AGUCGUC-CGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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