miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16098 3' -63.9 NC_004065.1 + 42641 0.68 0.502436
Target:  5'- --aCCGCGCCgC-GCGcCAGCuGGCAa -3'
miRNA:   3'- uagGGCGCGGgGuCGCaGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 126247 0.68 0.508814
Target:  5'- -gCCCGUGCggcggaucgagccgCCCAGCGcguUCAGCAGcGCc -3'
miRNA:   3'- uaGGGCGCG--------------GGGUCGC---AGUCGUC-CGu -5'
16098 3' -63.9 NC_004065.1 + 20153 0.68 0.511557
Target:  5'- --aCCGUG-CCCAGUGUCAGCcaugcGGCGg -3'
miRNA:   3'- uagGGCGCgGGGUCGCAGUCGu----CCGU- -5'
16098 3' -63.9 NC_004065.1 + 87244 0.69 0.432334
Target:  5'- --gCCGC-CCCCGGCGccaccacCAGCAGGCc -3'
miRNA:   3'- uagGGCGcGGGGUCGCa------GUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 98833 0.69 0.457978
Target:  5'- aAUCUCGCGCCgCCGaUGUCAGgGGGUc -3'
miRNA:   3'- -UAGGGCGCGG-GGUcGCAGUCgUCCGu -5'
16098 3' -63.9 NC_004065.1 + 188543 0.68 0.475518
Target:  5'- cGUCCCGaCGCCCCGGCG-CAcGCu-GCu -3'
miRNA:   3'- -UAGGGC-GCGGGGUCGCaGU-CGucCGu -5'
16098 3' -63.9 NC_004065.1 + 57432 0.68 0.481736
Target:  5'- cAUCUCGUGgucugugucucuuuUCUUAGCGUCGGCGGGCc -3'
miRNA:   3'- -UAGGGCGC--------------GGGGUCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 105051 0.68 0.493387
Target:  5'- -aCCCGCGCCuCUGGCcgcccuUCGuGCAGGCGc -3'
miRNA:   3'- uaGGGCGCGG-GGUCGc-----AGU-CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 105542 0.68 0.502436
Target:  5'- -aUCCGCGCggcccuggaCCCGGCG-CAGC-GGCAc -3'
miRNA:   3'- uaGGGCGCG---------GGGUCGCaGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 132364 0.68 0.508814
Target:  5'- cAUCCUGCGCCagaucgcgaacaaaCCGGCGUCuccguGCcgcaaGGGCGg -3'
miRNA:   3'- -UAGGGCGCGG--------------GGUCGCAGu----CG-----UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 61405 0.69 0.423974
Target:  5'- -gCCCGCGgCaCCAGCGcCAGCAGccGCu -3'
miRNA:   3'- uaGGGCGCgG-GGUCGCaGUCGUC--CGu -5'
16098 3' -63.9 NC_004065.1 + 164477 0.7 0.406736
Target:  5'- -aCCCGCcggcgacGCgCCCAGCGUCAGCu-GCGu -3'
miRNA:   3'- uaGGGCG-------CG-GGGUCGCAGUCGucCGU- -5'
16098 3' -63.9 NC_004065.1 + 174606 0.7 0.375919
Target:  5'- -aCCCGCGCCCCGGa--CAGCccaucAGGCc -3'
miRNA:   3'- uaGGGCGCGGGGUCgcaGUCG-----UCCGu -5'
16098 3' -63.9 NC_004065.1 + 78811 0.71 0.317128
Target:  5'- -cCCCGCGCCggcgguaCCGGUGaUCAGgAGGCGg -3'
miRNA:   3'- uaGGGCGCGG-------GGUCGC-AGUCgUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 95948 0.72 0.29783
Target:  5'- uUCCUGagguugaGCUCCuGCGUCAGCGGGUu -3'
miRNA:   3'- uAGGGCg------CGGGGuCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 167815 0.72 0.28506
Target:  5'- uUCCCGCuCCCCGGUG-CAGCAcaGGCc -3'
miRNA:   3'- uAGGGCGcGGGGUCGCaGUCGU--CCGu -5'
16098 3' -63.9 NC_004065.1 + 147896 0.73 0.272725
Target:  5'- -gUCCGCGCCgCCGGauaCGUCAGCcGGGCGc -3'
miRNA:   3'- uaGGGCGCGG-GGUC---GCAGUCG-UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 191870 0.74 0.207572
Target:  5'- gAUCgCCGCGUcuUCCAGCGUCAGCAuGCGc -3'
miRNA:   3'- -UAG-GGCGCG--GGGUCGCAGUCGUcCGU- -5'
16098 3' -63.9 NC_004065.1 + 164129 0.75 0.180334
Target:  5'- uUCCagGCGCCgCGGCaUCAGCAGGCGg -3'
miRNA:   3'- uAGGg-CGCGGgGUCGcAGUCGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 188334 0.66 0.644224
Target:  5'- cGUCuCCGCGUCCCucGCGaugcUCAGCcccagcgaggGGGCGc -3'
miRNA:   3'- -UAG-GGCGCGGGGu-CGC----AGUCG----------UCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.