Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16098 | 3' | -63.9 | NC_004065.1 | + | 102375 | 0.76 | 0.176114 |
Target: 5'- gGUCCCGcCGCCCuCGGCGccgCAGC-GGCAg -3' miRNA: 3'- -UAGGGC-GCGGG-GUCGCa--GUCGuCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 163437 | 0.68 | 0.520746 |
Target: 5'- -gUCCGCGUCCaucGUG-CGGCAGGCGc -3' miRNA: 3'- uaGGGCGCGGGgu-CGCaGUCGUCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 121072 | 0.67 | 0.548678 |
Target: 5'- --gUCGUGCCCCAGguCGUCGgcguacugccGCAGGCGc -3' miRNA: 3'- uagGGCGCGGGGUC--GCAGU----------CGUCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 188334 | 0.66 | 0.644224 |
Target: 5'- cGUCuCCGCGUCCCucGCGaugcUCAGCcccagcgaggGGGCGc -3' miRNA: 3'- -UAG-GGCGCGGGGu-CGC----AGUCG----------UCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 167815 | 0.72 | 0.28506 |
Target: 5'- uUCCCGCuCCCCGGUG-CAGCAcaGGCc -3' miRNA: 3'- uAGGGCGcGGGGUCGCaGUCGU--CCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 95948 | 0.72 | 0.29783 |
Target: 5'- uUCCUGagguugaGCUCCuGCGUCAGCGGGUu -3' miRNA: 3'- uAGGGCg------CGGGGuCGCAGUCGUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 174606 | 0.7 | 0.375919 |
Target: 5'- -aCCCGCGCCCCGGa--CAGCccaucAGGCc -3' miRNA: 3'- uaGGGCGCGGGGUCgcaGUCG-----UCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 164477 | 0.7 | 0.406736 |
Target: 5'- -aCCCGCcggcgacGCgCCCAGCGUCAGCu-GCGu -3' miRNA: 3'- uaGGGCG-------CG-GGGUCGCAGUCGucCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 98833 | 0.69 | 0.457978 |
Target: 5'- aAUCUCGCGCCgCCGaUGUCAGgGGGUc -3' miRNA: 3'- -UAGGGCGCGG-GGUcGCAGUCgUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 132364 | 0.68 | 0.508814 |
Target: 5'- cAUCCUGCGCCagaucgcgaacaaaCCGGCGUCuccguGCcgcaaGGGCGg -3' miRNA: 3'- -UAGGGCGCGG--------------GGUCGCAGu----CG-----UCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 57432 | 0.68 | 0.481736 |
Target: 5'- cAUCUCGUGgucugugucucuuuUCUUAGCGUCGGCGGGCc -3' miRNA: 3'- -UAGGGCGC--------------GGGGUCGCAGUCGUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 87244 | 0.69 | 0.432334 |
Target: 5'- --gCCGC-CCCCGGCGccaccacCAGCAGGCc -3' miRNA: 3'- uagGGCGcGGGGUCGCa------GUCGUCCGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 164129 | 0.75 | 0.180334 |
Target: 5'- uUCCagGCGCCgCGGCaUCAGCAGGCGg -3' miRNA: 3'- uAGGg-CGCGGgGUCGcAGUCGUCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 105051 | 0.68 | 0.493387 |
Target: 5'- -aCCCGCGCCuCUGGCcgcccuUCGuGCAGGCGc -3' miRNA: 3'- uaGGGCGCGG-GGUCGc-----AGU-CGUCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 191870 | 0.74 | 0.207572 |
Target: 5'- gAUCgCCGCGUcuUCCAGCGUCAGCAuGCGc -3' miRNA: 3'- -UAG-GGCGCG--GGGUCGCAGUCGUcCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 61405 | 0.69 | 0.423974 |
Target: 5'- -gCCCGCGgCaCCAGCGcCAGCAGccGCu -3' miRNA: 3'- uaGGGCGCgG-GGUCGCaGUCGUC--CGu -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 105542 | 0.68 | 0.502436 |
Target: 5'- -aUCCGCGCggcccuggaCCCGGCG-CAGC-GGCAc -3' miRNA: 3'- uaGGGCGCG---------GGGUCGCaGUCGuCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 184494 | 0.67 | 0.539311 |
Target: 5'- --gCCGcCGCCgCGGCGcCGGguGGCGu -3' miRNA: 3'- uagGGC-GCGGgGUCGCaGUCguCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 147896 | 0.73 | 0.272725 |
Target: 5'- -gUCCGCGCCgCCGGauaCGUCAGCcGGGCGc -3' miRNA: 3'- uaGGGCGCGG-GGUC---GCAGUCG-UCCGU- -5' |
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16098 | 3' | -63.9 | NC_004065.1 | + | 78811 | 0.71 | 0.317128 |
Target: 5'- -cCCCGCGCCggcgguaCCGGUGaUCAGgAGGCGg -3' miRNA: 3'- uaGGGCGCGG-------GGUCGC-AGUCgUCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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