miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16098 3' -63.9 NC_004065.1 + 121072 0.67 0.548678
Target:  5'- --gUCGUGCCCCAGguCGUCGgcguacugccGCAGGCGc -3'
miRNA:   3'- uagGGCGCGGGGUC--GCAGU----------CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 113306 0.67 0.548678
Target:  5'- cAUCCCGCGaCCCAGCGagA-CGGcGCAc -3'
miRNA:   3'- -UAGGGCGCgGGGUCGCagUcGUC-CGU- -5'
16098 3' -63.9 NC_004065.1 + 120597 0.66 0.624979
Target:  5'- ---aCGCGCCgCCAGCG-CGGCuGGUu -3'
miRNA:   3'- uaggGCGCGG-GGUCGCaGUCGuCCGu -5'
16098 3' -63.9 NC_004065.1 + 188543 0.68 0.475518
Target:  5'- cGUCCCGaCGCCCCGGCG-CAcGCu-GCu -3'
miRNA:   3'- -UAGGGC-GCGGGGUCGCaGU-CGucCGu -5'
16098 3' -63.9 NC_004065.1 + 92534 0.67 0.558095
Target:  5'- uUCCuCGUGCCCCGGCGgCA-CGGGa- -3'
miRNA:   3'- uAGG-GCGCGGGGUCGCaGUcGUCCgu -5'
16098 3' -63.9 NC_004065.1 + 169848 0.66 0.596164
Target:  5'- --gCCGUGCgggCCAGCGUCgaccugugcauGGCGGGCGc -3'
miRNA:   3'- uagGGCGCGg--GGUCGCAG-----------UCGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 154266 0.66 0.624979
Target:  5'- -cUCCGCcucCCCCGG-GUCAGCgcugGGGCAg -3'
miRNA:   3'- uaGGGCGc--GGGGUCgCAGUCG----UCCGU- -5'
16098 3' -63.9 NC_004065.1 + 184494 0.67 0.539311
Target:  5'- --gCCGcCGCCgCGGCGcCGGguGGCGu -3'
miRNA:   3'- uagGGC-GCGGgGUCGCaGUCguCCGU- -5'
16098 3' -63.9 NC_004065.1 + 94691 0.66 0.615361
Target:  5'- gAUCUCGCgGCCCCugaccuuggagGGCGgcUCgAGCGGGCc -3'
miRNA:   3'- -UAGGGCG-CGGGG-----------UCGC--AG-UCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 178116 0.67 0.57706
Target:  5'- -gUCCGCaGUCUCAGCGUCAGgAagccGGCGa -3'
miRNA:   3'- uaGGGCG-CGGGGUCGCAGUCgU----CCGU- -5'
16098 3' -63.9 NC_004065.1 + 184433 0.67 0.558095
Target:  5'- cGUCCCGCGCCCCccuuagAGCAGGa- -3'
miRNA:   3'- -UAGGGCGCGGGGucgcagUCGUCCgu -5'
16098 3' -63.9 NC_004065.1 + 100620 0.66 0.586598
Target:  5'- cUUCaGCaGCCCCaucAGCGUCGGC-GGCAg -3'
miRNA:   3'- uAGGgCG-CGGGG---UCGCAGUCGuCCGU- -5'
16098 3' -63.9 NC_004065.1 + 126420 0.67 0.529999
Target:  5'- -gCCCGCgGUCCCGGCugcgGUCcAGCAGGa- -3'
miRNA:   3'- uaGGGCG-CGGGGUCG----CAG-UCGUCCgu -5'
16098 3' -63.9 NC_004065.1 + 42722 0.71 0.33168
Target:  5'- cUCCUcCGCCCCAGUGaucgCAGCGcGGCGg -3'
miRNA:   3'- uAGGGcGCGGGGUCGCa---GUCGU-CCGU- -5'
16098 3' -63.9 NC_004065.1 + 81371 0.66 0.634603
Target:  5'- -gUUCGCGCacgagcaCGGCGUCcuGCAGGCAg -3'
miRNA:   3'- uaGGGCGCGgg-----GUCGCAGu-CGUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 201077 0.66 0.644224
Target:  5'- -cCCCGC-CUCCGGCGaCGG-AGGCGg -3'
miRNA:   3'- uaGGGCGcGGGGUCGCaGUCgUCCGU- -5'
16098 3' -63.9 NC_004065.1 + 25569 0.69 0.435705
Target:  5'- -cCCCGCGCCUgaucaucauccagaGGCGgcugagCAGCAGGCc -3'
miRNA:   3'- uaGGGCGCGGGg-------------UCGCa-----GUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 38177 0.68 0.511557
Target:  5'- -aUCCGCGCCagCGGCaUCAGCuucGGCAu -3'
miRNA:   3'- uaGGGCGCGGg-GUCGcAGUCGu--CCGU- -5'
16098 3' -63.9 NC_004065.1 + 96640 0.69 0.45711
Target:  5'- -gCCgGCGgucgcgagcucuuUCUCGGCGUCGGCGGGCu -3'
miRNA:   3'- uaGGgCGC-------------GGGGUCGCAGUCGUCCGu -5'
16098 3' -63.9 NC_004065.1 + 151525 0.67 0.539311
Target:  5'- -aUCCGCGCCCUGGaCGgCGGCAagGGCc -3'
miRNA:   3'- uaGGGCGCGGGGUC-GCaGUCGU--CCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.