miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16098 5' -52.4 NC_004065.1 + 118752 0.66 0.993852
Target:  5'- aGAUGGUCUUCu-CUCggUCAcGGCGCc -3'
miRNA:   3'- -CUACUAGAAGuuGAGgaGGU-CCGCGu -5'
16098 5' -52.4 NC_004065.1 + 132632 0.66 0.993852
Target:  5'- -cUGAUCUUCGACUaCCUgCGcGGC-CAc -3'
miRNA:   3'- cuACUAGAAGUUGA-GGAgGU-CCGcGU- -5'
16098 5' -52.4 NC_004065.1 + 210130 0.66 0.992921
Target:  5'- ---cGUCUUCGAUUCCUCgGcGGCGaCGg -3'
miRNA:   3'- cuacUAGAAGUUGAGGAGgU-CCGC-GU- -5'
16098 5' -52.4 NC_004065.1 + 87629 0.66 0.992921
Target:  5'- --cGAUCgUCAGCgCCagcUCGGGCGCAa -3'
miRNA:   3'- cuaCUAGaAGUUGaGGa--GGUCCGCGU- -5'
16098 5' -52.4 NC_004065.1 + 208883 0.66 0.990723
Target:  5'- cGGUGcgCggUGACggacugagUUCUCCGGGCGCAg -3'
miRNA:   3'- -CUACuaGaaGUUG--------AGGAGGUCCGCGU- -5'
16098 5' -52.4 NC_004065.1 + 136378 0.66 0.989439
Target:  5'- aGAUGGUCaUCGAUggaCUCCAGGaGCc -3'
miRNA:   3'- -CUACUAGaAGUUGag-GAGGUCCgCGu -5'
16098 5' -52.4 NC_004065.1 + 157340 0.66 0.989439
Target:  5'- --gGGUCgcucggCAGgUUCUCCAGGUGCc -3'
miRNA:   3'- cuaCUAGaa----GUUgAGGAGGUCCGCGu -5'
16098 5' -52.4 NC_004065.1 + 104211 0.66 0.988021
Target:  5'- cGUGAUCagCGACggaUCCgAGGCGCAc -3'
miRNA:   3'- cUACUAGaaGUUGaggAGG-UCCGCGU- -5'
16098 5' -52.4 NC_004065.1 + 201513 0.67 0.986295
Target:  5'- --aGAUCUUCAGCagUCCcaugcgacggagcUCCGcGGCGCu -3'
miRNA:   3'- cuaCUAGAAGUUG--AGG-------------AGGU-CCGCGu -5'
16098 5' -52.4 NC_004065.1 + 33377 0.67 0.984746
Target:  5'- --cGAUCUUCuGCgcgcggagCCUCUcgAGGCGCu -3'
miRNA:   3'- cuaCUAGAAGuUGa-------GGAGG--UCCGCGu -5'
16098 5' -52.4 NC_004065.1 + 109658 0.67 0.984746
Target:  5'- --cGA-CUcCGGCagggUCCUCCGGGCGCu -3'
miRNA:   3'- cuaCUaGAaGUUG----AGGAGGUCCGCGu -5'
16098 5' -52.4 NC_004065.1 + 193460 0.67 0.982873
Target:  5'- -uUGAUCUcauggUCAACUUCg-CGGGCGCc -3'
miRNA:   3'- cuACUAGA-----AGUUGAGGagGUCCGCGu -5'
16098 5' -52.4 NC_004065.1 + 41898 0.68 0.976209
Target:  5'- --aGAUCagCAGCUCC-CCggaGGGUGCAa -3'
miRNA:   3'- cuaCUAGaaGUUGAGGaGG---UCCGCGU- -5'
16098 5' -52.4 NC_004065.1 + 151281 0.68 0.973615
Target:  5'- cGUGAUCacgggCAGCaccgugaucUCCUcCCAGGCGCu -3'
miRNA:   3'- cUACUAGaa---GUUG---------AGGA-GGUCCGCGu -5'
16098 5' -52.4 NC_004065.1 + 63414 0.68 0.97082
Target:  5'- aGGUGAUCaggCAcgUCgCUCCGGGCGUg -3'
miRNA:   3'- -CUACUAGaa-GUugAG-GAGGUCCGCGu -5'
16098 5' -52.4 NC_004065.1 + 94614 0.68 0.964274
Target:  5'- --cGGUCcgaUCGGCUCCUgacggggUCGGGCGCGg -3'
miRNA:   3'- cuaCUAGa--AGUUGAGGA-------GGUCCGCGU- -5'
16098 5' -52.4 NC_004065.1 + 192119 0.69 0.957521
Target:  5'- cGUGGUCcagguguacgUCAGCUCgUCCgAGGUGCGg -3'
miRNA:   3'- cUACUAGa---------AGUUGAGgAGG-UCCGCGU- -5'
16098 5' -52.4 NC_004065.1 + 110556 0.69 0.949522
Target:  5'- aGGUGGacgCUUCGGCggUCCgCCAGGCGUc -3'
miRNA:   3'- -CUACUa--GAAGUUG--AGGaGGUCCGCGu -5'
16098 5' -52.4 NC_004065.1 + 146388 0.7 0.925355
Target:  5'- ---cGUCUUCGACUUCUUCGGGCcCAa -3'
miRNA:   3'- cuacUAGAAGUUGAGGAGGUCCGcGU- -5'
16098 5' -52.4 NC_004065.1 + 165552 0.7 0.913395
Target:  5'- uGUGGUg--CAGCUCCUCCAgcagcucggccacGGCGCGa -3'
miRNA:   3'- cUACUAgaaGUUGAGGAGGU-------------CCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.