miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
161 5' -56.7 AC_000007.1 + 9243 0.66 0.520271
Target:  5'- gCCAugGAGCGCCUugAgGCcuuGGGGGa- -3'
miRNA:   3'- -GGUugCUCGCGGA--UgCGcc-UCUCCau -5'
161 5' -56.7 AC_000007.1 + 23760 0.67 0.46766
Target:  5'- -uGGCGGGCGCUcGgGCuugGGAGAGGg- -3'
miRNA:   3'- ggUUGCUCGCGGaUgCG---CCUCUCCau -5'
161 5' -56.7 AC_000007.1 + 11405 0.67 0.46766
Target:  5'- aCC-GCGAGCGguugCUGCGCGaGGAGGa- -3'
miRNA:   3'- -GGuUGCUCGCg---GAUGCGCcUCUCCau -5'
161 5' -56.7 AC_000007.1 + 5093 0.67 0.437439
Target:  5'- gCGGCGAGCGCCUucugGCGCauuuGGucAGGg- -3'
miRNA:   3'- gGUUGCUCGCGGA----UGCG----CCucUCCau -5'
161 5' -56.7 AC_000007.1 + 34205 0.68 0.380537
Target:  5'- gCCAGgGGGCGCCUggAUGCuuuGAGAGaGUGg -3'
miRNA:   3'- -GGUUgCUCGCGGA--UGCGc--CUCUC-CAU- -5'
161 5' -56.7 AC_000007.1 + 11220 0.69 0.354002
Target:  5'- -gGGCGAGgGCCUgGCGCGGcuAGGa- -3'
miRNA:   3'- ggUUGCUCgCGGA-UGCGCCucUCCau -5'
161 5' -56.7 AC_000007.1 + 26507 0.71 0.254521
Target:  5'- gCCGGCG-GCGCCUGaggaGCGGAGGuuGUAg -3'
miRNA:   3'- -GGUUGCuCGCGGAUg---CGCCUCUc-CAU- -5'
161 5' -56.7 AC_000007.1 + 8959 0.71 0.254521
Target:  5'- aCCGugGAGCgaGCCggACGCGGAGAu--- -3'
miRNA:   3'- -GGUugCUCG--CGGa-UGCGCCUCUccau -5'
161 5' -56.7 AC_000007.1 + 16853 0.73 0.184189
Target:  5'- gCCAACGAGCGCCU-CGgGGAGuuugccuacGGa- -3'
miRNA:   3'- -GGUUGCUCGCGGAuGCgCCUCu--------CCau -5'
161 5' -56.7 AC_000007.1 + 6511 1.09 0.000412
Target:  5'- aCCAACGAGCGCCUACGCGGAGAGGUAg -3'
miRNA:   3'- -GGUUGCUCGCGGAUGCGCCUCUCCAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.